View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_34 (Length: 222)
Name: NF3078_low_34
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_34 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold1744 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0097 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 30718 - 30908
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30718 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
30817 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30818 |
cccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaataagcgagcactcttcaaac |
30908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 20726889 - 20727079
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20726889 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
20726988 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20726989 |
cccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaataagcgagcactcttcaaac |
20727079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 24780364 - 24780252
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780364 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
24780265 |
T |
|
| Q |
117 |
tccaaggaaaagc |
129 |
Q |
| |
|
||||||| |||| |
|
|
| T |
24780264 |
cccaaggataagc |
24780252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 11023692 - 11023519
Alignment:
| Q |
33 |
aagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagccc |
131 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||| ||||| |||| || |
|
|
| T |
11023692 |
aagtaaaagagatagagggatgagagaaaatgacataagaagtttatcttagttcgacctaaaacatcaaggcctatgtctagtccccaagaaaaatccg |
11023593 |
T |
|
| Q |
132 |
cttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||| ||| | | ||||||||| ||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
11023592 |
cttgagatttttactgatc-agcttttaaggaggataagctagtaacatttacaaat-aatgagcactcttcaaac |
11023519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 9409 - 9219
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9409 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
9310 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
9309 |
tccaaggaaaagccccttgagattttcattaacctagcttttaatcgggataagctagtaacctttacaaataagcgagcactcttcaaac |
9219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 112930 - 113120
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
112930 |
aataaataacaagtaaaataaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
113029 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
113030 |
cccaaggaaaagtcccttgagattttcactaacctagcttttaaacgggataagctagtaacctttataaataagcgagcactcttcaaac |
113120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 353712 - 353840
Alignment:
| Q |
79 |
cctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaac |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
353712 |
cctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttttaaacaggataagctagtaac |
353811 |
T |
|
| Q |
179 |
ctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||||||| || ||||||||| ||||| |
|
|
| T |
353812 |
ctttacaagatagcgagcactctccaaac |
353840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 39925825 - 39925636
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaaggatgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtct |
117 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39925825 |
aataaatgacaaataaagtaaaagagataaaggatgagagaaaacgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtcc |
39925726 |
T |
|
| Q |
118 |
ccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
39925725 |
ccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
39925636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 3274458 - 3274268
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||| | || |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3274458 |
aataaatgacaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
3274359 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
3274358 |
cccaagaaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
3274268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 3277868 - 3277678
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||| | || |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3277868 |
aataaatgacaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
3277769 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
3277768 |
cccaagaaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
3277678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 5026885 - 5027054
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||| | || |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5026885 |
aataaatgacaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
5026984 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5026985 |
cccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaatctttacaa |
5027054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 39038752 - 39038562
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagga-tgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39038752 |
aataaataacaagtaaagtaaaagagataaaggggtgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
39038653 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
39038652 |
cccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
39038562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 186263 - 186434
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
186263 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaaggacataagaagtttattctagttcagcctaaaacaccaaggtctacgtctagtc |
186362 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagt-aacctttacaaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
186363 |
cccaaggaaaagccccttgagattttcactaacttagcttttatacgggataaactagtaaacctttacaaa |
186434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 12352737 - 12352548
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12352737 |
aataaataacaagtaaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
12352638 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||| |
|
|
| T |
12352637 |
cccaaggaaaagtcccttgagattttcactaacctagcttttaaacgggataagctagtaa-cattacaaataagcgagcactcttcaaac |
12352548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 14859396 - 14859211
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaaggatgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtct |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
14859396 |
aataaataacaagtaaagtaaaagagataatggatgagagaaaatgacacaagaagtttatcttagtttggcctaaaacaccaagacctacgtctagtcc |
14859297 |
T |
|
| Q |
118 |
ccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| | ||||||||||||||| |
|
|
| T |
14859296 |
ccaaggaaaagcctcttgagattttcactaacctaacttttaaacgggata----agtaacctttgcaaataaacgagcactcttcaaac |
14859211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18677777 - 18677587
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaa-ggatgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||| | || |||| ||||||||||||| |||||||||||| |||| |||| |||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
18677777 |
aataaatgacaaataaattaaaagagataaatggatgagagaaactgacgcaagatgtttatcctaattcagcctaaaacaccacggcctacgtctagtc |
18677678 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
18677677 |
cccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaatatttacaaataaacgagcactcttcaaac |
18677587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 24170628 - 24170469
Alignment:
| Q |
31 |
taaagtaaaagagataaa-ggatgagagaaaatgacat-aagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaa-ggaaaa |
127 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| ||| || ||||||| ||||||||| || ||||||||| ||| ||||||||||| | || |||||| |
|
|
| T |
24170628 |
taaagtaaaagagataaaaggatgaggaaaaaaaacaccaaaaagtttaccctagttcgacccaaaacaccatggc-tacgtctagtccctaaaggaaaa |
24170530 |
T |
|
| Q |
128 |
gccccttgagattttcactaacctagcttttaaacgggataagc--tagtaacctttacaa |
186 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||| | ||||||||||||||| |
|
|
| T |
24170529 |
accccttgagattttcactaaccaaacttttaaacaagataaactatagtaacctttacaa |
24170469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 21198641 - 21198464
Alignment:
| Q |
31 |
taaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagc |
129 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21198641 |
taaagtaaaagagataaagggatgagaaaaaatgacacaacaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagc |
21198542 |
T |
|
| Q |
130 |
cccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
21198541 |
cccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatatgcgagcactcttcaaac |
21198464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 52986778 - 52986968
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52986778 |
aataaataacaaataaagtaaaagagataaagggatgagagaaaaggacacaagaaatttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
52986877 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
52986878 |
cccaaggaaaagacccttgagattttcactaacttagcttttaaacgggataagctagtaacctttacaaaatagcgagcactctccaaac |
52986968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 16851619 - 16851429
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||| | || |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16851619 |
aataaatgacaaataaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagtttggcctaaaacaccaaggcctacgtctagtc |
16851520 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
16851519 |
cccaagaaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
16851429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 50944214 - 50944333
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50944214 |
aataaataacaagtaaaataaaagagataaagggatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
50944313 |
T |
|
| Q |
117 |
tccaaggaaaagccccttga |
136 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
50944314 |
cccaaggaaaatccccttga |
50944333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 17365109 - 17365021
Alignment:
| Q |
71 |
aagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagccccttgagattttcactaacctagcttttaa |
160 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| ||| ||||||| | |||||||| |||| |||||||||||| | | ||||||||| |
|
|
| T |
17365109 |
aagtttatcctagttcgacctaaaacaacaaggtcta-gtctagttcctaaggaaaataccctcgagattttcactgatcaagcttttaa |
17365021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 107 - 297
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107 |
aataaataacaagtaaaatagaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
206 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
207 |
cccaaggaaaagccccttgagattttcattaacctagcttttaaacgggataagccagtaacctttacaaataaacaagcactcttcaaac |
297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 3296 - 3106
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| ||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3296 |
aataaataacaagtaaaatagaagagataaagggatgagagaaaatgacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
3197 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
3196 |
cccaaggaaaagccccttgagattttcattaacctagcttttaaacgggataagccagtaacctttacaaataaacaagcactcttcaaac |
3106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 14404510 - 14404699
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaaggatgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtct |
117 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14404510 |
aataaatgacaaataaagtaaaagagataaaggatgagagaaaacgacacaagaagtttatcctaattcggcctaaaacaccaaggcctacgtctagtcc |
14404609 |
T |
|
| Q |
118 |
ccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
14404610 |
ccaaggaaaagtcccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaagatagcgagcactctccaaac |
14404699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 40665866 - 40666059
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaat---gacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtcta |
113 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40665866 |
aataaatgataaataaagtaaaagagataaagggatgagagaaaataatgacacaagaagtttatcctagttcggcctaaaacatcaaggcctacgtcta |
40665965 |
T |
|
| Q |
114 |
gtctccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||||||||||| |
|
|
| T |
40665966 |
gtccccaaggaaaagccccttgagattttcactaacctaacttttaaacgggataagctaataacctttacaaataagcgaacactcttcaaac |
40666059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 21407 - 21251
Alignment:
| Q |
31 |
taaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagc |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21407 |
taaagtaaaagagataaagggatgagagaaaaagacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagc |
21308 |
T |
|
| Q |
130 |
cccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaa |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21307 |
cccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaa |
21251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 37440007 - 37439833
Alignment:
| Q |
34 |
agtaaaagagataaagga-tgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagcccc |
132 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
37440007 |
agtaaaagggataaaggaatgagagaaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagttcccaaggaaaagaccc |
37439908 |
T |
|
| Q |
133 |
ttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37439907 |
ttgagattttcactaacctagcttttaaacaggataagctagtaacctttacaaataagcgagcactcttcaaac |
37439833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 54001345 - 54001458
Alignment:
| Q |
74 |
tttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagcta |
173 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||| || |||||||||||||||| ||||||||| | | | |||||||| |||||||||| |
|
|
| T |
54001345 |
tttatcctagttcaacctaaaacaccaag-cttacgtctaatcctcaaggaaaagccccttaagattttcaaggatcaaacttttaaataggataagcta |
54001443 |
T |
|
| Q |
174 |
gtaacctttacaaat |
188 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
54001444 |
ataacctttccaaat |
54001458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1744 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 166 - 346
Alignment:
| Q |
31 |
taaagtaaaagagataaagg-atgagaga-aaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaag |
128 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
166 |
taaagtaaaagagattaagggatgagagagaaaggacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaag |
265 |
T |
|
| Q |
129 |
ccccttgagattttcactaacctagc-ttttaaacgggataagctagtaacctttac-aaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| || ||||||||| ||||| |
|
|
| T |
266 |
ccccttgagattttcactaacttagctttttaaacgggataagctagtaacctttacaaaattagcgagcactctccaaac |
346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 89093 - 89237
Alignment:
| Q |
63 |
gacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtctccaaggaaaagccccttgagattttcactaacctagcttttaaac |
162 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89093 |
gacacaagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtccccaaggaaaagccccttgagattttcactaacctagcttttaaac |
89192 |
T |
|
| Q |
163 |
gggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
89193 |
gggataagctagtaacctttacaagatagcgagcactctccaaac |
89237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 8827395 - 8827226
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaa-ggatgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
8827395 |
aataaataacaaataaagtaaaagagataaatggatgagagaaaaagacacaagaattttatcctagttcggcccaaaacaccaaggcctatgtctagtc |
8827296 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaa |
187 |
Q |
| |
|
|||| ||||| |||||||||||||||||| || |||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
8827295 |
cccaaagaaaa-acccttgagattttcactagccaagcttttaaataggagaagctagtaaactttacaaa |
8827226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 15890708 - 15890541
Alignment:
| Q |
18 |
aataaataataagtaaagtaaaagagataaagg-atgagagaaaatgacataagaagtttatcctagttcggcctaaaacaccaaggcctacgtctagtc |
116 |
Q |
| |
|
||||||||| || ||||| || ||||||||||| || |||||||| |||| ||||||||| |||||||||||||||||| |||||| || |||||| | |
|
|
| T |
15890708 |
aataaataacaaataaagcaagagagataaagggataagagaaaa-gacac--gaagtttatactagttcggcctaaaacaacaaggctta-gtctagcc |
15890613 |
T |
|
| Q |
117 |
tccaaggaaaagccccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaat |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15890612 |
cccaaggaaaagtcccttgagattttcactgctcaagcttttaattaggataagctagtaacctttacaaat |
15890541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 46467849 - 46467774
Alignment:
| Q |
131 |
ccttgagattttcactaacctagcttttaaacgggataagctagtaacctttacaaatgagtgagcactcttcaaac |
207 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| |||||| ||||||||||||| |||| | |||||||||| ||||| |
|
|
| T |
46467849 |
ccttaagattttcactaaccaaacttttaaacaggataaactagtaacctttataaat-aatgagcactctccaaac |
46467774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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