View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_35 (Length: 216)
Name: NF3078_low_35
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 11695821 - 11695608
Alignment:
| Q |
1 |
tatgatatgatagaaactaaagaagataaagtttttcaccagatatgaatcatttcatttgaaagttgatgagctggttattgtgaagaagtgtgaaaag |
100 |
Q |
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| T |
11695821 |
tatgatatgatagaaactaaagaagataaagtttttcaccagatatgaatcatttcatttgaaagttgatgagctggttattgtgaagaagtgtgaaaag |
11695722 |
T |
|
| Q |
101 |
cattcattatttgtgaaaagaaaacgtgaattttg-----------------agagagaatttgaatgtgatccatgaaatttcgaagaagatttgagac |
183 |
Q |
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| T |
11695721 |
cattcattatttgtgaaaagaaaacgtgaattttgagaagtgtttgtatattagagagaatttgaatgtgatccatgaaatttcgaagaagatttgagac |
11695622 |
T |
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| Q |
184 |
cacaatgttacatt |
197 |
Q |
| |
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|||||||||||||| |
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| T |
11695621 |
cacaatgttacatt |
11695608 |
T |
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