View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_36 (Length: 216)
Name: NF3078_low_36
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_36 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0699 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 14093511 - 14093302
Alignment:
| Q |
1 |
aaggcacaccattgactagaaggcataagaggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatattctattcannnn |
100 |
Q |
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| T |
14093511 |
aaggcacaccattgactagaaggcataagaggtgttgatagtagtgttgtttttgatgggaggtgtaattcaaagtttaatttaatattctattca--tt |
14093414 |
T |
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| Q |
101 |
nnnnnnnngttaaaaccatcaaaccnnnnnnnnnnnnncccttgcaacctgttcaccggcatttgaaggttaaaaatcatcttttccatgatggataaag |
200 |
Q |
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| T |
14093413 |
ttttttttgttaaaaccatcaaaccaaaaaaaaaa----ctttgcaacctgttcaccggcatttgaaggttaaaaatcatctttcccatggtggataagg |
14093318 |
T |
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| Q |
201 |
attagcctttcccatg |
216 |
Q |
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| T |
14093317 |
attagcctttcccatg |
14093302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 35972456 - 35972516
Alignment:
| Q |
30 |
aggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatattc |
90 |
Q |
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| T |
35972456 |
aggtgtagattgtagtgttgttttagatgggaggtgtatttcaaagtttaatttaatattc |
35972516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 45611003 - 45611064
Alignment:
| Q |
29 |
gaggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatattc |
90 |
Q |
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| T |
45611003 |
gaggtgtagtttggagtgttattttagatgggaggtgtatttcaaagtttaatttaatattc |
45611064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 43351158 - 43351101
Alignment:
| Q |
31 |
ggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatat |
88 |
Q |
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| T |
43351158 |
ggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtttaatat |
43351101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 45611139 - 45611188
Alignment:
| Q |
167 |
aggttaaaaatcatcttttccatgatggataaagattagcctttcccatg |
216 |
Q |
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| T |
45611139 |
aggttaaaaatcatcttttccatggtggaaaaggattaaccttttccatg |
45611188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 37510359 - 37510299
Alignment:
| Q |
30 |
aggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatattc |
90 |
Q |
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| T |
37510359 |
aggtgtagattgtagtgttgttttaaatgggaggtgtatttcaaagtttaatttaatattc |
37510299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 8424204 - 8424147
Alignment:
| Q |
31 |
ggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatat |
88 |
Q |
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| T |
8424204 |
ggtgtagatagtagtgttttttcaaataggaggtgtaattcaatgtttagtttaatat |
8424147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 4489 - 4547
Alignment:
| Q |
31 |
ggtgtagatagtagtgttgttttagatgggaggtgtaattcaaagtttaatttaatatt |
89 |
Q |
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| T |
4489 |
ggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtttaatatt |
4547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 813659 - 813619
Alignment:
| Q |
28 |
agaggtgtagatagtagtgttgttttagatgggaggtgtaa |
68 |
Q |
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| T |
813659 |
agaggtgtagatagtagtgtttttttacatgggaggtgtaa |
813619 |
T |
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