View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_4 (Length: 585)
Name: NF3078_low_4
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_4 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Original strand, 31045049 - 31045599
Alignment:
| Q |
16 |
atgaactataagcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31045049 |
atgaactataagcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgcta |
31045148 |
T |
|
| Q |
116 |
ttctcctaaagcctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31045149 |
ttctcctaaagcctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaa |
31045248 |
T |
|
| Q |
216 |
actcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacattta |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31045249 |
actcatgcaaacatgttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacattta |
31045348 |
T |
|
| Q |
316 |
atttaactctagacttctacaacttcatctatcctctccgcacacttctacaacttcatttgttctctccacactctaaaatatatggattggaacacac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
31045349 |
atttaactctagacttctacaacttcatctatcctctccgcacacttctacaacttcatttgttctctccacactataaaatttatggattggaacacgc |
31045448 |
T |
|
| Q |
416 |
ttctacagtttattaggattactgcaaaagatatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatga |
515 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31045449 |
ttctacagtttatcaggattactgcaaaagatatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatga |
31045548 |
T |
|
| Q |
516 |
tggaaacttgaatgaatcatcttactagagagatcatgtgcgaaacctatc |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31045549 |
tggaaacttgaatgaatcatcttactagagagatcatgtgcgacacctatc |
31045599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 446 - 549
Target Start/End: Original strand, 31035277 - 31035380
Alignment:
| Q |
446 |
atatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagag |
545 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31035277 |
atatgaatttctaccagcaaatgcctacaatagaggaccgaggtacacacttaaatttttaaaataatgatgtaaacttgaatgaatcatcttactagag |
31035376 |
T |
|
| Q |
546 |
agat |
549 |
Q |
| |
|
|||| |
|
|
| T |
31035377 |
agat |
31035380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 555
Target Start/End: Original strand, 31056596 - 31056657
Alignment:
| Q |
494 |
acttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcatgtg |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| |||||| |
|
|
| T |
31056596 |
acttaaatttttaaaataatgatggaaacttaaatgaataatcttatcagagagaacatgtg |
31056657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 494 - 555
Target Start/End: Complemental strand, 31096551 - 31096490
Alignment:
| Q |
494 |
acttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagagatcatgtg |
555 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
31096551 |
acttatatttttaaaataatgatggaatcttgaatgaatcatctttgtagagagaacatgtg |
31096490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 172338 - 172005
Alignment:
| Q |
16 |
atgaactataagcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaa |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || ||||||| |
|
|
| T |
172338 |
atgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaa |
172239 |
T |
|
| Q |
108 |
a-gttgctcttctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaatta |
200 |
Q |
| |
|
| |||||||||||| ||||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
172238 |
atgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaatta |
172139 |
T |
|
| Q |
201 |
agattcaaaatttaaactcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgt |
300 |
Q |
| |
|
|| ||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
172138 |
ag-ttcaaaattcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgt |
172040 |
T |
|
| Q |
301 |
caca-acatacatttaatttaactctagacttcta |
334 |
Q |
| |
|
|||| |||| ||||||||| ||||||| ||||||| |
|
|
| T |
172039 |
cacacacattcatttaattaaactctacacttcta |
172005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 171984 - 171919
Alignment:
| Q |
439 |
gcaaaagatatgaattgctaccagcaaaggaatacaacagaggaccgaggtacaaacttaaattttta |
506 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
171984 |
gcaaaagatatgagtttctaccgacaaaggcctacaacagaggaccgag--acacacttaaattttta |
171919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 5261 - 5209
Alignment:
| Q |
496 |
ttaaatttttaaaataatgatggaaacttgaatgaatcatcttactagagaga |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5261 |
ttaaatttttaaaataatgatggaaacttgaatgaatcatctttgtagagaga |
5209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University