View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_5 (Length: 534)
Name: NF3078_low_5
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 6145943 - 6145440
Alignment:
| Q |
17 |
tcaaaggatcggtgctggaatggttttttcagttttaacaatgatagtagcagctttggtagagnnnnnnnggcttaaagttgttgatatgaatccatca |
116 |
Q |
| |
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||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
6145943 |
tcaaaggattggtattggaatggttttttcggttttaacaatgatagtagcagctttggtcgagaaaaaaaggcttaaagttgttgagatgaatccatca |
6145844 |
T |
|
| Q |
117 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6145843 |
catggttcactttcaatgagtgttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgcttgttggtttacaagaatatttct |
6145744 |
T |
|
| Q |
217 |
atgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
316 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145743 |
atgatcaagttcctgattcaatgagaagcttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgt |
6145644 |
T |
|
| Q |
317 |
tgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatttgaatagtagtcgtttggataaattctattggctattggcagctataacttca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6145643 |
tgatcatgtgacaagtaaaagtggtaaaagttggtttggtgaagatttgaatagtagtcgtttggataaattctattggctattggcagctataactaca |
6145544 |
T |
|
| Q |
417 |
ttgagtgtgttagtgtttgtgctctttgctcaaaggtatacttataagaatgtgcaaaataatgttgtggctgattgttatgatggaaagtgtgatgatg |
516 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145543 |
ttgagtgtgtttgtgtttgtgctctttgctcaaaggtatacttataagaatgtgcaaaataatgttgtggctgattgttatgatggaaagtgtgatgatg |
6145444 |
T |
|
| Q |
517 |
gtgg |
520 |
Q |
| |
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|||| |
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| T |
6145443 |
gtgg |
6145440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 139 - 475
Target Start/End: Complemental strand, 23692644 - 23692308
Alignment:
| Q |
139 |
ttttttggttagcgccgcagtttctaattatcggttttggcgacggtttggcgctcgttggtttacaagaatatttctatgaccaagttcccgattcaat |
238 |
Q |
| |
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|||||||||| || || || ||||||||||| |||||||| || || || | || || || ||||||||||||||||||||||||||||| |||||||| |
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| T |
23692644 |
ttttttggttggctccacaatttctaattattggttttggtgatggatttacccttgtgggattacaagaatatttctatgaccaagttcctgattcaat |
23692545 |
T |
|
| Q |
239 |
gagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaagtagtttgttgataacaattgttgatcatgtgacaagtaaaagt |
338 |
Q |
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|||||| || || || | |||| | |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| | |||| |||| | |
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| T |
23692544 |
gagaagcttaggtatagctttttatttaagtgtgattggagctgcaaattttattagtagtgtgttgataacaattgttgatcatataacaaagaaaaat |
23692445 |
T |
|
| Q |
339 |
ggtaaaagttggtttggtgaagatttgaatagtagtcgtttggataaattctattggctattggcagctataacttcattgagtgtgttagtgtttgtgc |
438 |
Q |
| |
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|| || |||||||||||| | ||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| | ||| | |||| |||||||| |
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| T |
23692444 |
gggaagagttggtttggtaaggatttgaatagtagtagattggacaaattttattggctattggcagctataactacggtgaatttgttcttgtttgtgt |
23692345 |
T |
|
| Q |
439 |
tctttgctcaaaggtatacttataagaatgtgcaaaa |
475 |
Q |
| |
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|||||||| ||| ||| | || || ||||||||||| |
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| T |
23692344 |
tctttgctagaagatattcatacaaaaatgtgcaaaa |
23692308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 195 - 355
Target Start/End: Complemental strand, 31074931 - 31074771
Alignment:
| Q |
195 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggagctgcaaattttctaa |
294 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||| || ||||||| ||||||||||| | | | || |||||||||||||||| || || ||| ||| |
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| T |
31074931 |
gttggtttacaagagtatttctatggccaagttcctgactcaatgaagagtttgggaatggcattatatcttagtgtgattggagttggaagtttcttaa |
31074832 |
T |
|
| Q |
295 |
gtagtttgttgataacaattgttgatcatgtgacaagtaaaagtggtaaaagttggtttgg |
355 |
Q |
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||||||| || || || ||||| ||||| |||||| || | ||||||||||||| |||| |
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| T |
31074831 |
gtagttttttaatcactattgtggatcaagtgacagaaaagaatggtaaaagttggattgg |
31074771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 31063521 - 31063437
Alignment:
| Q |
195 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttgggaattggactttaccttagtgtgattggag |
279 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| | | | || |||||||||||||||| |
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| T |
31063521 |
gttggtttacaagagtatttctacgaccaagttcctgactcaatgagaagcttaggaatggcattatatcttagtgtgattggag |
31063437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 31057439 - 31057383
Alignment:
| Q |
195 |
gttggtttacaagaatatttctatgaccaagttcccgattcaatgagaagtttggga |
251 |
Q |
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|||||| ||||||| |||||||| ||| ||||||| |||||||||||||| |||||| |
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| T |
31057439 |
gttggtatacaagagtatttctacgacgaagttcctgattcaatgagaagcttggga |
31057383 |
T |
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