View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_6 (Length: 488)
Name: NF3078_low_6
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Original strand, 9452533 - 9452981
Alignment:
| Q |
14 |
atcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatatttttagaatttgctattacttacatcttcaacaaccttaat |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
9452533 |
atcatttacatgttttcgtaaaattcactactctggcttaattacttacatctatatatttttagacattgctattacttacatcttcaacagccttaat |
9452632 |
T |
|
| Q |
114 |
tactctataatacatgtacaagaaattttcagtgttttgaaggaattgctatataattttacaatcagtttaactatccatgtctctagaatcagactat |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
9452633 |
tact----aatacatgtacaagaaattttcagtgttttgaaggaattgctatataattttacagtcagtttaactattaatgtctctagaatcagactat |
9452728 |
T |
|
| Q |
214 |
tatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataaattaga |
313 |
Q |
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|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9452729 |
tatataattataattgtgtaatgaaa--tcagggaaataaaactttgtcaagtatcaggttaacaattccttgctctattatgatagtacataaattaga |
9452826 |
T |
|
| Q |
314 |
tttggttagataaataaaactttgtcaaaa-aacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttcacaaaa |
412 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9452827 |
tttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttcacgaaa |
9452926 |
T |
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| Q |
413 |
gcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaatt |
467 |
Q |
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| T |
9452927 |
gcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatt |
9452981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 21546945 - 21546588
Alignment:
| Q |
14 |
atcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatatttttagaatttgctattacttacatcttcaacaaccttaat |
113 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| | ||||||||||||| | | ||||||| |
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| T |
21546945 |
atcatttacatgttttcgtaaaattcactactctagcttaattacttacatctatatatttttaaacattgttcttacttacatctttatcggccttaat |
21546846 |
T |
|
| Q |
114 |
tactctataatacatgtacaagaaattttcag--tgttttgaaggaattgctatataattttacaatcagtttaactatccatgtctctagaatcagact |
211 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
21546845 |
tactctatattacatgtacaagaaattttcagagtgttttgaaggaattgctatataattt-acaatcagtttaactattcatgtctctagaatcaaact |
21546747 |
T |
|
| Q |
212 |
attatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataaatta |
311 |
Q |
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| T |
21546746 |
attatataattataactgtgtaatgaaa--tcagggaaataaaact--gtcaagtaacaggttaacaattccttgctctattatgatagtacataaatta |
21546651 |
T |
|
| Q |
312 |
gatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttataa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
21546650 |
gatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 469
Target Start/End: Original strand, 46424083 - 46424170
Alignment:
| Q |
375 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattca |
469 |
Q |
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|||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattca |
46424170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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