View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_7 (Length: 463)
Name: NF3078_low_7
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 24008751 - 24008320
Alignment:
| Q |
15 |
gaagtattgagataatatttaacaaaataactctatattataagacatggctgcatcgcacagtgtttgcatcatgttggtatttatagctagttttgtt |
114 |
Q |
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| T |
24008751 |
gaagtattgagataatatttaacaaaataactctatattataagacatggctgcatcgcacactgtttgcatcatgttggtatttatagctagttttgtt |
24008652 |
T |
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| Q |
115 |
ttgttagtccaaactggactttctgatgatgttaccgatccaccaattggatcccctactgaatatatttatgtagaagggtcattaacttcatatcaga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||| ||||||| |
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| T |
24008651 |
ttgttagtccaaactggactttctgatgatgttaccgatccaccaattggatcccctactgaatatatttatgcagaagagccattgtcttcgtatcaga |
24008552 |
T |
|
| Q |
215 |
agtatttgactaattgtgcgaaccagctatatccaatttgtggtgaggagatattttctaatgtattttttggtaatacaacttatagcaatatatgttg |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
24008551 |
tttatttgaataattgtgcgaaccagctatatccaatttgtggtgaggagatattttctaatgtattttttggtaaccaaacttttagcaatatatgttg |
24008452 |
T |
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| Q |
315 |
tttaaatcttgtgaaagatttgggaaaaagctgccatgatgacctggttaaatatattctgttatctccaaaattcaagaaaaacataatttcaatttgg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| |||| | ||||||||||| |
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| T |
24008451 |
tttaaatcttgtgaaagatttgggaaaaagctgccatgatgatctggttaaatatattctgtcaactccaaaattccagaagaacaaagtttcaatttgg |
24008352 |
T |
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| Q |
415 |
gaaaggagtgagcaagtttggaatgattgtgc |
446 |
Q |
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| T |
24008351 |
gaaaggagtgagcaagtttggaatgattgtgc |
24008320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 53 - 446
Target Start/End: Complemental strand, 24002889 - 24002496
Alignment:
| Q |
53 |
tataagacatggctgcatcgcacagtgtttgcatcatgttggtatttatagctagttttgttttgttagtccaaactggactttctgatgatgttaccga |
152 |
Q |
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|||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
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| T |
24002889 |
tataagacatggctgcgtcccacactgtttgcatcatgttggtatttatagctagttttgctttgttagtccaaacaggactttctgatgatgttactga |
24002790 |
T |
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| Q |
153 |
tccaccaattggatcccctactgaatatatttatgtagaagggtcattaacttcatatcagaagtatttgactaattgtgcgaaccagctatatccaatt |
252 |
Q |
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||||||||||||||| |||| ||||| | |||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24002789 |
tccaccaattggatctcctattgaatttgattatacagaaaagccattaacttcatatcagaagtatttgactaattgtgctaaccagctatatccaatt |
24002690 |
T |
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| Q |
253 |
tgtggtgaggagatattttctaatgtattttttggtaatacaacttatagcaatatatgttgtttaaatcttgtgaaagatttgggaaaaagctgccatg |
352 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24002689 |
tgtggtgaggagatattttctactgtattttttggtaatacaacttatagcaatatatgttgtttaaatcttgtgaaagatttgggaaaaagttgccatg |
24002590 |
T |
|
| Q |
353 |
atgacctggttaaatatattctgttatctccaaaattcaagaaaaacataatttcaatttgggaaaggagtgagcaagtttggaatgattgtgc |
446 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24002589 |
atgaccttgttaaatatattctgttatctccaaaattcaagaaaaacataatttcaatttgggaaaggagtgagcaagtttggaatgattgtgc |
24002496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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