View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3078_low_8 (Length: 450)
Name: NF3078_low_8
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 2858287 - 2857879
Alignment:
| Q |
16 |
gagttaacaattttggattggaaaagagtaattttctttgtaaattgcatatgacattgcatttagatccttgggcttgttttctaagtaacagagtaaa |
115 |
Q |
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| T |
2858287 |
gagtgaacaattttggattggaaaagagtaattttctttgtaaattgcatatgacattgcatttagatccttgggcttgttttctaagtaatagagtaaa |
2858188 |
T |
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| Q |
116 |
attgggctatgttgaaagcccaattaacaatccctcttattaaggaattgcttctcacaccctttttgtgctttaaaacctctaaggtctttttgattct |
215 |
Q |
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| T |
2858187 |
attgggctatgttgaaagcccaattaacaatccctcttattaaggaattgcttctcacaccctctttgtgctttaaaacctctaaggtctttttgattct |
2858088 |
T |
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| Q |
216 |
aattttaagattattatattgattattaaaactatcataaaaaggaaattatgttgactatactcnnnnnnnnnataaataagtatactacacnnnnnnn |
315 |
Q |
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| T |
2858087 |
aattttaaga---ttatattgattattaaaactatcataaataggaaattatgttaactatactctt--------tttttaagtatactacacttttttt |
2857999 |
T |
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| Q |
316 |
nggtaaagttgttttgcacaaattaagacatcatgatacaaatttctatagaag--nnnnnnnnttaagtggaatatacaaggtagtacttcctgagaag |
413 |
Q |
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| T |
2857998 |
tggtaaagttgtttttcacaaattaagacatcatgatacaaatttccatagaagaaaaaaaaaattaagtggaatatacaaggtagtacttcctgagaag |
2857899 |
T |
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| Q |
414 |
aaaagaaaaaagacttttct |
433 |
Q |
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|||||||||||||||||||| |
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| T |
2857898 |
aaaagaaaaaagacttttct |
2857879 |
T |
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