View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3078_low_9 (Length: 450)
Name: NF3078_low_9
Description: NF3078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3078_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 28836008 - 28836431
Alignment:
| Q |
11 |
caaaggtgtgatataattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaata |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836008 |
caaaggtgtgatataattttaggaacagcaagagggctggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaata |
28836107 |
T |
|
| Q |
111 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836108 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
28836207 |
T |
|
| Q |
211 |
attgtaaggcaaaacaattttattcacttagtttacatcatatttatttgaggagcatatgtaaagaagagagaacttaaaacttaccactttcatgtct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836208 |
attgtaaggcaaaacaattttattcacttagtttacatcatatttatttgaggagcatatgtaaagaagagagaacttaaaacttaccactttcatgtct |
28836307 |
T |
|
| Q |
311 |
catgctttgtataacttacaagtcttccaaacatgcaattatcactgtcaggggatatacagcacctgagtatgcaatccatggtcaattatcagaaaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836308 |
catgctttgtataacttacaagtcttccaaacatgcaattgtcactgtcaggggatacacagcacctgagtatgcaatccatggtcaattatcagaaaag |
28836407 |
T |
|
| Q |
411 |
gctgatacctacagctatggaatt |
434 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28836408 |
gctgatacctacagctatggaatt |
28836431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 28826558 - 28826795
Alignment:
| Q |
11 |
caaaggtgtgatataattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaata |
110 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28826558 |
caaaggtgtaacataattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagagtagcaata |
28826657 |
T |
|
| Q |
111 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
210 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28826658 |
tcctccttgatgataatcttcatcccaaaattgctgattttggattggcgcggcttttgccaggggatcgatctcatctaagcacaggagttgcaggaac |
28826757 |
T |
|
| Q |
211 |
attgtaaggcaaaacaattttattcacttagtttacat |
248 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
28826758 |
attgtaaggcaaaacaatttcattcacctagattacat |
28826795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 356 - 434
Target Start/End: Original strand, 28826869 - 28826947
Alignment:
| Q |
356 |
tgtcaggggatatacagcacctgagtatgcaatccatggtcaattatcagaaaaggctgatacctacagctatggaatt |
434 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28826869 |
tgtcaggggatacacagcacctgagtatgcaatccatggtcaattatcagaaaaggctgatacctacagctacggaatt |
28826947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 28820150 - 28820298
Alignment:
| Q |
11 |
caaaggtgtgatataattttaggcacagcaaggggactggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaata |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || || ||| ||| ||||| || |||||| ||| ||| |||||||| ||||||||||||| ||||| |
|
|
| T |
28820150 |
caaaggtatgatataattttaggcacagcaagaggtctatcctatctgcatgaagatttccacgtttgcatcatacatagggatataaagactaacaata |
28820249 |
T |
|
| Q |
111 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggc |
159 |
Q |
| |
|
| ||| | |||||| ||||||| || | ||||||||||||||||||||| |
|
|
| T |
28820250 |
tcctcttagatgatgatcttcagcctagaattgctgattttggattggc |
28820298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 28820452 - 28820520
Alignment:
| Q |
356 |
tgtcaggggatatacagcacctgagtatgcaatccatggtcaattatcagaaaaggctgatacctacag |
424 |
Q |
| |
|
|||||||||||| || ||||| || |||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28820452 |
tgtcaggggatacactgcaccagaatatgcaattcatggtcagttatcagtgaaggctgatacctacag |
28820520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University