View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3079_low_1 (Length: 360)
Name: NF3079_low_1
Description: NF3079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3079_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 41711252 - 41711591
Alignment:
| Q |
17 |
attatcgacaaatcattttcaatgaaaacaaaagtattatcattagtcaccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaa |
116 |
Q |
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| T |
41711252 |
attatcgacaaatcattttcaatgaaaacaaaagtattatcattagtccccgttacataatgttatctcctctgtatggtcaccaagccaagaccattaa |
41711351 |
T |
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| Q |
117 |
aactaaattttgcctcaaataggttgtgctatattgtaatgtaatttggctataaatatttatgttacgttctttaccatatttcatacacacttctttc |
216 |
Q |
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| T |
41711352 |
aactaaattttgcctcaaataggttgtgctatattgtaatgtaatttggctataaatatttatgttatgttctttaccatatttcatacagacttctttc |
41711451 |
T |
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| Q |
217 |
ttattgattttatttcatacaaactattagcatttccacgtcatatgtatttgatcaagcaaaataaatcatccatggggtggttggttgtttttatgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41711452 |
ttattgattttatttcatacaaactattagcatttccacgtcatatgtatttgatcaagcaaaataaatcatccatgggg----tggttgtttttatgtt |
41711547 |
T |
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| Q |
317 |
tagttcttttactcttcaattttccatatttctcttcttcttct |
360 |
Q |
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| T |
41711548 |
tagttcttttactcttcaattttccatatttctcttcttcttct |
41711591 |
T |
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