View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3079_low_2 (Length: 314)
Name: NF3079_low_2
Description: NF3079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3079_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 3529651 - 3529938
Alignment:
| Q |
25 |
cttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaacaagatca |
124 |
Q |
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| T |
3529651 |
cttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaag--gattgtgatggaattagaacaagacca |
3529748 |
T |
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| Q |
125 |
tgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttgatggt |
224 |
Q |
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| T |
3529749 |
tgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttgatggt |
3529848 |
T |
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| Q |
225 |
agtgattctccaagacaacaaagtttaagaaaacatgtgaaggatcaacacctacatcacnnnnnnnnngttagaagaaggcttcatact |
314 |
Q |
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| T |
3529849 |
agtgattctccaagacaacaaagtttaagaaaacatgtcaaagttcaacaccaacatcacaaaaaacaagttagaagaaggcttcatact |
3529938 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 1796159 - 1796067
Alignment:
| Q |
136 |
gtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttgatggtagtg |
228 |
Q |
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| T |
1796159 |
gtgcttgcattcaaagcttaatgaaacaattaataaccataaagtcaaaagaaaccatgaacactaccaaagaatgtgttttttatggtagtg |
1796067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 1796804 - 1796739
Alignment:
| Q |
51 |
gttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaaca |
118 |
Q |
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| T |
1796804 |
gttatatacatgaccacataaaaataaatcaagaaaccaa--aaaaggattatgatggaattagaaca |
1796739 |
T |
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