View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3079_low_3 (Length: 275)

Name: NF3079_low_3
Description: NF3079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3079_low_3
NF3079_low_3
[»] chr1 (2 HSPs)
chr1 (170-264)||(33614805-33614899)
chr1 (1-54)||(33614572-33614625)
[»] chr5 (2 HSPs)
chr5 (170-264)||(33436796-33436890)
chr5 (1-54)||(33437062-33437115)
[»] chr8 (1 HSPs)
chr8 (212-264)||(24236845-24236897)
[»] chr3 (1 HSPs)
chr3 (217-264)||(13791665-13791712)
[»] chr6 (1 HSPs)
chr6 (217-261)||(17884934-17884978)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 33614805 - 33614899
Alignment:
Q  170 aaaaatggaaacatggatcaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctctctcagcagagat 264  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33614805 aaaaatggaaacatggatgaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctctctcagcagagat 33614899  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33614572 - 33614625
Alignment:
Q  1 ctaaaatatctctgaatatcttaacctttgcaaactgcaccaagattataggca 54  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  33614572 ctaaaatacctctgaatatcttcaccttggcaaactgcaccaagattataggca 33614625  T

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Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 33436890 - 33436796
Alignment:
Q  170 aaaaatggaaacatggatcaccttgcatcagtaatctcaaaaacaaccatcttggtgaccttaccatcccttacatactctctctcagcagagat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33436890 aaaaatggaaacatggatcaccttgcatcagtaatctcaaaaataaccatcttggtgaccttaccatcccttacatactctctctcaacagagat 33436796  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33437115 - 33437062
Alignment:
Q  1 ctaaaatatctctgaatatcttaacctttgcaaactgcaccaagattataggca 54  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  33437115 ctaaaatacctctgaatatcttgaccttggcaaactgcaccaagattataggca 33437062  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 24236845 - 24236897
Alignment:
Q  212 acaaccatcttggtgaccttaccatcccttacatactctctctcagcagagat 264  Q
    |||| |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  24236845 acaatcatcttcgtgaccttaccatccctcacatactccctctcagcagagat 24236897  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 13791665 - 13791712
Alignment:
Q  217 catcttggtgaccttaccatcccttacatactctctctcagcagagat 264  Q
    |||||||||||||||||||||||| ||||  || ||||||||||||||    
T  13791665 catcttggtgaccttaccatccctcacatgttccctctcagcagagat 13791712  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 17884934 - 17884978
Alignment:
Q  217 catcttggtgaccttaccatcccttacatactctctctcagcaga 261  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||||    
T  17884934 catcttggttaccttaccatccctatcatactctcgctcagcaga 17884978  T

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