View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3079_low_5 (Length: 243)
Name: NF3079_low_5
Description: NF3079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3079_low_5 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 5079741 - 5079505
Alignment:
| Q |
7 |
gaagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaatta |
106 |
Q |
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| T |
5079741 |
gaagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaatta |
5079642 |
T |
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| Q |
107 |
gtctcacagcatgggaaagaaattcatgaacttttagctcatgtatcttctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagag |
206 |
Q |
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| T |
5079641 |
gtctcacagcatgggaaagaaattcatgaacttttagctcatgtatcctctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagag |
5079542 |
T |
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| Q |
207 |
ttaatatgacagatgtaactgcatcattagtaaaaat |
243 |
Q |
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| T |
5079541 |
ttaatatgacagatgtaactgcatcattagtaaaaat |
5079505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 5120177 - 5120305
Alignment:
| Q |
7 |
gaagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaatta |
106 |
Q |
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| T |
5120177 |
gaagccaacaaatgaaatgttttcagaagaattaaccttgaaaacttggattactgaatcaatggcgaattccagtatggaagttgtggattacaattta |
5120276 |
T |
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| Q |
107 |
gtctcacagcatgggaaagaaattcatga |
135 |
Q |
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| T |
5120277 |
ggctcacaacatgagaaagaaattcatga |
5120305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 5102555 - 5102680
Alignment:
| Q |
10 |
gccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaattagtc |
109 |
Q |
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| T |
5102555 |
gccaacaaatgaaatgttttcagaagaattaaccttgaaaacttggattactgaatcaatggcgaattccagtatggaagttgtggattacaatttaggc |
5102654 |
T |
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| Q |
110 |
tcacagcatgggaaagaaattcatga |
135 |
Q |
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||||| |||| ||||||||||||||| |
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| T |
5102655 |
tcacaacatgagaaagaaattcatga |
5102680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 5102690 - 5102750
Alignment:
| Q |
166 |
tttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaact |
226 |
Q |
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| T |
5102690 |
tttagcattgagatgttgtgaagattcacctgaggctcggattaatatgacagatgtaact |
5102750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 5120315 - 5120375
Alignment:
| Q |
166 |
tttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgtaact |
226 |
Q |
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| T |
5120315 |
tttagcattgagatgctgtgaagattcacctgaggctcggattaatatgacagatgcaact |
5120375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 16886813 - 16887038
Alignment:
| Q |
7 |
gaagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaatta |
106 |
Q |
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|||||||||| |||||||||||| | ||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||||||||||||||| || ||| |
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| T |
16886813 |
gaagccaacaaatgaaatgtttgtacaagaattaaccttaaaaacatggattagtgagtcaatgcctaattcagttatggaagttgtggattacaattta |
16886912 |
T |
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| Q |
107 |
gtctcacagcatgggaaagaaattcatgaacttttagctcatgtatcttctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagag |
206 |
Q |
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| T |
16886913 |
gtctcacaacaagggaatgaaactcatgaaattgtatcacatgtatcatctgttttggatttagcattgagatgttgtgcagattcaccagaagcaagga |
16887012 |
T |
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| Q |
207 |
ttaatatgacagatgtaactgcatca |
232 |
Q |
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||| |||| ||||||||||||||||| |
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| T |
16887013 |
ttagtatggcagatgtaactgcatca |
16887038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 14411948 - 14411825
Alignment:
| Q |
7 |
gaagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaatta |
106 |
Q |
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|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||| || |||||| ||||||||||||||||| || || |
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| T |
14411948 |
gaagccaacaaatgaaatgttttcagaagaattaactttgaaaacttggattagcgaatcgatggccaattcgagtatggaagttgtggattacaatcta |
14411849 |
T |
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| Q |
107 |
gtctcacagcatgggaaagaaatt |
130 |
Q |
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| ||| || ||||||||||||||| |
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| T |
14411848 |
gactcgcaacatgggaaagaaatt |
14411825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 25475011 - 25474944
Alignment:
| Q |
155 |
tctatttttgttttagcattgaggtgttgtgaagatttacctgaggcaagagttaatatgacagatgt |
222 |
Q |
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|||||||||| |||||| | || |||||||||||||||||| | |||||| |||||||| ||||||| |
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| T |
25475011 |
tctatttttggtttagccctcagttgttgtgaagatttacctaaagcaagaattaatatggcagatgt |
25474944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 25715076 - 25714975
Alignment:
| Q |
8 |
aagccaacagatgaaatgtttgcagaagaattaaccttgaaaacttggattagtgaatcaatacacaattcagttatggaagttgtggattcaaaattag |
107 |
Q |
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|||||||||||||| ||||||| | |||| ||| |||||| || ||||| ||||||||| | | |||||| ||||||| || |||||||||| |||| |
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| T |
25715076 |
aagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtgaatcattgcctaattcaattatggaggtcatggattcaaatttag |
25714977 |
T |
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| Q |
108 |
tc |
109 |
Q |
| |
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|| |
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|
| T |
25714976 |
tc |
25714975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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