View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_high_11 (Length: 257)
Name: NF3080_high_11
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 41930124 - 41929898
Alignment:
| Q |
19 |
caagttgcatagcatggaaagagggcaaaaacatgaaacggcagctccattaatggacaaacttgtattcagtaaggtgattgtagtttcacatatttta |
118 |
Q |
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| T |
41930124 |
caagttgcatagcatggaaagagggcaaaaacatgaaacggcagctccattaatggacaaacttgtattcagtaaggtgattgtagtttcacatatttta |
41930025 |
T |
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| Q |
119 |
attcactactgtcttggttcgaacaaacaataaccgtaacaaaattgctctatactaataataatgtttttgcaacatgatcaggtaaaacaagctttag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41930024 |
attcactactgtcttggttcgaacaaacaataaccgtaacaaaattgctctgtactaataataatgtttttgcaacatgatcaggtaaaacaagctttag |
41929925 |
T |
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| Q |
219 |
ggggtaatgtacgtattgttttgtctg |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41929924 |
ggggtaatgtacgtattgttttgtctg |
41929898 |
T |
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