View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_high_20 (Length: 225)
Name: NF3080_high_20
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 34569042 - 34568857
Alignment:
| Q |
19 |
cacagatacaagtacttacatattatctactaacgatgttctcaaactaacaatgaacatcaaactcaggtctttgaagaatctgagcggaatccttatc |
118 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34569042 |
cacaaatacaaatacttacatattatctattaacgatgttctcaaactaacaacgaacatcaaactcaggtctttgaagaatctgagcggaatccttatc |
34568943 |
T |
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| Q |
119 |
aacgaagatcaagacaaatttcaagattcatagaccacagatacaagtacttacatatcatctactaacaatgttcttaaactaac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
34568942 |
aacgaagatcaagacaaatttcaagattcatagaccacagatacaagtacttacatatcatctaataacgatgttcttaaactaac |
34568857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 34568907 - 34568805
Alignment:
| Q |
19 |
cacagatacaagtacttacatattatctactaacgatgttctcaaactaacaatgaacatcaaactcaggtctttgaagaatctgagcggaatccttatc |
118 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
34568907 |
cacagatacaagtacttacatatcatctaataacgatgttcttaaactaacaatgaacatcaaacccagatctttgaagaatctgagcggaatccttatc |
34568808 |
T |
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| Q |
119 |
aac |
121 |
Q |
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||| |
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| T |
34568807 |
aac |
34568805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 34569071 - 34568992
Alignment:
| Q |
125 |
gatcaagacaaatttcaagattcatagaccacagatacaagtacttacatatcatctactaacaatgttcttaaactaac |
204 |
Q |
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|||||||| ||||||||||||||| |||||||| |||||| ||||||||||| ||||| |||| ||||||| |||||||| |
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| T |
34569071 |
gatcaagaaaaatttcaagattcagagaccacaaatacaaatacttacatattatctattaacgatgttctcaaactaac |
34568992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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