View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3080_high_9 (Length: 329)

Name: NF3080_high_9
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3080_high_9
NF3080_high_9
[»] chr1 (1 HSPs)
chr1 (18-317)||(6993320-6993619)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 6993619 - 6993320
Alignment:
Q  18 gaataatagtgagtgttgttatggtattgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttcgttc 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993619 gaataacagtgagtgttgttatggtattgtttttgttagtagagttaacagtgagtttgagttcaagaactgaatggtcagcgttattggagcttcgttc 6993520  T
Q  118 atcgatggggataagggggaaggagtggcctnnnnnnnctgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtatcaaa 217  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993519 atcgatggggataagggggaaggagtggcctaaaaaaactgatccatgtcggaactggaccggtgttgagtgccggaacgatcaagttgttggtatcaaa 6993420  T
Q  218 gtggctgggttgaatagaacccacaaaggtcgtcttaacccaagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgcttctg 317  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993419 gtggctgggttgaatagaacccacaaaggtcgtcttaacccgagttttgaagttgatgctcttgcaaatttcacactattggagtctttcaatgcttctg 6993320  T

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