View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_1 (Length: 773)
Name: NF3080_low_1
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 91 - 540
Target Start/End: Complemental strand, 38097693 - 38097247
Alignment:
| Q |
91 |
catatctcaacaattctcaaaatcgttcccataactatgaagatgctaaggagtccaatgcaactcctgctctttctcacccgaagttccaacaattgag |
190 |
Q |
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| T |
38097693 |
catatctcaacaattctcaaaatcgttcccataactatgaagatgctaaggagtccaatgcaactcctgctctttctcacccgaagttccaacaattgag |
38097594 |
T |
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| Q |
191 |
tttgttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatac |
290 |
Q |
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| T |
38097593 |
tttgttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatac |
38097494 |
T |
|
| Q |
291 |
tccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattattatttcaaacgaattcatggcacaat |
390 |
Q |
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| T |
38097493 |
tccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtat---tatttcaaacgaattcatggcacaat |
38097397 |
T |
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| Q |
391 |
catatatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacc |
490 |
Q |
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| T |
38097396 |
catatatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacc |
38097297 |
T |
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| Q |
491 |
tctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
540 |
Q |
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| T |
38097296 |
tctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 587 - 714
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
587 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
681 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
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| Q |
682 |
agtgtactcattacatattctacctagactaga |
714 |
Q |
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| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 735 - 773
Target Start/End: Complemental strand, 38096967 - 38096929
Alignment:
| Q |
735 |
gaccagaccagaccagatcaccatcatttcctactctct |
773 |
Q |
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| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctct |
38096929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
423 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
502 |
Q |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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