View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_10 (Length: 273)
Name: NF3080_low_10
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 38128024 - 38128289
Alignment:
| Q |
9 |
gattatactgtattcggtaatagaggaataagtaattgatcaagtaatgatggaagatattcaatagaatggactgaactttgacctgtgattactttgt |
108 |
Q |
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| T |
38128024 |
gattatactgttttcggtaataggggaataagtaattgatcaagtaatgatggaagatattcaatagaatggactgaactttgacttgtgattactttgt |
38128123 |
T |
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| Q |
109 |
aatcttttcaaaatagtagtatgcatgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctca |
208 |
Q |
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| T |
38128124 |
aatcttttcaaaatagtagtatgcatgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctca |
38128223 |
T |
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| Q |
209 |
agcttgaa-cnnnnnnnnnnnnncttataaaaatattagaatcataggattaagttaagaagtttg |
273 |
Q |
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| T |
38128224 |
agcttgaattttttttattttttcttataaaaatattagaatcataggattaagttaagaagtttg |
38128289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 45267165 - 45266991
Alignment:
| Q |
35 |
aataagtaattgatcaagtaatgatggaagat--attcaatagaatggactgaactttgacctgtgattactttgtaatcttttcaaaatagtagtatgc |
132 |
Q |
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| T |
45267165 |
aataagtaattgataaagtaatgatggaaccttaattgaattgagtggactaaactttgacttgtgattagtttgctatggtttcaaa------gtatgc |
45267072 |
T |
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| Q |
133 |
atgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctcaagctt |
213 |
Q |
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| T |
45267071 |
acgaaagagagtcaatgaattgaactgagaacgcgcttgaaacttaggttttacttgctaaaaaagatgaagctcaagctt |
45266991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 13090351 - 13090315
Alignment:
| Q |
236 |
aaaaatattagaatcataggattaagttaagaagttt |
272 |
Q |
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| T |
13090351 |
aaaaagattggaatcataggattaagttaagaagttt |
13090315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 18336855 - 18336891
Alignment:
| Q |
236 |
aaaaatattagaatcataggattaagttaagaagttt |
272 |
Q |
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| T |
18336855 |
aaaaagattggaatcataggattaagttaagaagttt |
18336891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 26614519 - 26614483
Alignment:
| Q |
236 |
aaaaatattagaatcataggattaagttaagaagttt |
272 |
Q |
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| T |
26614519 |
aaaaagattggaatcataggattaagttaagaagttt |
26614483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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