View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3080_low_13 (Length: 251)

Name: NF3080_low_13

Description: NF3080

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3080_low_13

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 7 - 251

Target Start/End: Complemental strand, 34852110 - 34851866

Alignment:

Q	7	gtgaacaatattttgttgaaaaattaataaaaaagaaataannnnnnnnncttttaaaattaattggtattattcattccattgaattctttgtatctag	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34852110	gtgaacaatattttgttgaaaaattaattaaaaagaaataatttttttttcttttaaaattaattggtatgatccattccattgaattctttgtatctag	34852011	T

Q	107	tttggtcatggaagatgaaggagaaggaatatgtacctgcaggatgctaaattttaataccatgcctcactgatttagtaataaagggaacctggaaaaa	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34852010	tttggtcatggaagatgaaggagaaggaatctgtacctgcaggatgctaaattttaataccatgcctcactgatttagtaataaagggaacctggaaaaa	34851911	T

Q	207	tcgaaattgtgtaatgaaaatgagtaacaaaggcataatactaat	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	34851910	tcgaaattgtgtaatgaaaatgagtaacaaagacataatactaat	34851866	T

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Target: chr5; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 143 - 201

Target Start/End: Complemental strand, 3512828 - 3512770

Alignment:

Q	143	ctgcaggatgctaaattttaataccatgcctcactgatttagtaataaagggaacctgg	201	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3512828	ctgcagaatgctaactcttaacaccatgtttcagtgatttagtaataaagggaacctgg	3512770	T

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