View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_14 (Length: 250)
Name: NF3080_low_14
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35307229 - 35307468
Alignment:
| Q |
1 |
ttatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggag |
100 |
Q |
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| T |
35307229 |
ttatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggag |
35307328 |
T |
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| Q |
101 |
tgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgta |
200 |
Q |
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| T |
35307329 |
tgagagtatcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgta |
35307428 |
T |
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| Q |
201 |
tatgcgatttctgaaaaattggcactctccttggcctatg |
240 |
Q |
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| T |
35307429 |
tatgcgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35322230 - 35322469
Alignment:
| Q |
1 |
ttatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggag |
100 |
Q |
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| T |
35322230 |
ttatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggag |
35322329 |
T |
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| Q |
101 |
tgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgta |
200 |
Q |
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| T |
35322330 |
tgagagtgtcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgta |
35322429 |
T |
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| Q |
201 |
tatgcgatttctgaaaaattggcactctccttggcctatg |
240 |
Q |
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| T |
35322430 |
tatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35311572 - 35311814
Alignment:
| Q |
1 |
ttatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggag |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35311572 |
ttatcttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggag |
35311671 |
T |
|
| Q |
101 |
tgagagtatcaagaggtgctaaattagtgtca---ccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcatt |
197 |
Q |
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| T |
35311672 |
tgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcatt |
35311771 |
T |
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| Q |
198 |
gtatatgcgatttctgaaaaattggcactctccttggcctatg |
240 |
Q |
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| T |
35311772 |
gtatatgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 35289448 - 35289670
Alignment:
| Q |
18 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
117 |
Q |
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|||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||| | ||||| || || |||||||||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
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| Q |
118 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
217 |
Q |
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| T |
35289548 |
gccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaa |
35289647 |
T |
|
| Q |
218 |
attggcactctccttggcctatg |
240 |
Q |
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|||| || ||| |||| |||||| |
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| T |
35289648 |
attgacattctgcttgacctatg |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 35280103 - 35280325
Alignment:
| Q |
18 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
117 |
Q |
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||||||||| ||||||||||||| | ||| ||||| | ||||| || | |||| ||||||||||||||| | |||| || || ||||||||| |
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| T |
35280103 |
attgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagagga |
35280202 |
T |
|
| Q |
118 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
217 |
Q |
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|| ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
35280203 |
gccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaa |
35280302 |
T |
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| Q |
218 |
attggcactctccttggcctatg |
240 |
Q |
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|||| || ||| ||||||||||| |
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| T |
35280303 |
attgacattctgcttggcctatg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 35275336 - 35275545
Alignment:
| Q |
18 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
117 |
Q |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
|
| Q |
118 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
217 |
Q |
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|||||||| |||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
35275436 |
gctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
35275535 |
T |
|
| Q |
218 |
attggcactc |
227 |
Q |
| |
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|||| ||||| |
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| T |
35275536 |
attgacactc |
35275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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