View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3080_low_15 (Length: 249)

Name: NF3080_low_15
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3080_low_15
NF3080_low_15
[»] chr1 (24 HSPs)
chr1 (1-237)||(38119901-38120138)
chr1 (1-235)||(11196940-11197171)
chr1 (1-193)||(45828653-45828845)
chr1 (1-167)||(47660950-47661116)
chr1 (1-164)||(23273217-23273380)
chr1 (1-192)||(22527072-22527269)
chr1 (1-184)||(51336982-51337165)
chr1 (1-184)||(47505418-47505607)
chr1 (1-169)||(13636805-13636979)
chr1 (1-176)||(35256210-35256385)
chr1 (1-169)||(19522092-19522257)
chr1 (1-163)||(26878787-26878955)
chr1 (1-169)||(19159098-19159272)
chr1 (1-163)||(3729154-3729322)
chr1 (1-163)||(21144007-21144175)
chr1 (1-169)||(52804945-52805119)
chr1 (62-166)||(94916-95020)
chr1 (1-169)||(50617697-50617872)
chr1 (1-169)||(31780472-31780640)
chr1 (85-164)||(8548257-8548336)
chr1 (110-169)||(470574-470633)
chr1 (97-172)||(49854822-49854897)
chr1 (187-237)||(23273168-23273218)
chr1 (101-178)||(16269590-16269667)
[»] chr5 (17 HSPs)
chr5 (1-238)||(38971119-38971356)
chr5 (4-238)||(42538874-42539101)
chr5 (1-193)||(511409-511602)
chr5 (1-193)||(5199838-5200036)
chr5 (1-169)||(42937467-42937635)
chr5 (5-169)||(8468-8638)
chr5 (1-169)||(8577344-8577518)
chr5 (95-238)||(15939813-15939956)
chr5 (23-193)||(40622792-40622962)
chr5 (1-163)||(28238544-28238712)
chr5 (1-163)||(38407662-38407830)
chr5 (1-161)||(30708125-30708291)
chr5 (1-169)||(19037968-19038142)
chr5 (1-161)||(7761621-7761787)
chr5 (1-169)||(28879676-28879850)
chr5 (166-238)||(36503413-36503485)
chr5 (132-167)||(8699237-8699272)
[»] chr7 (26 HSPs)
chr7 (1-238)||(37343328-37343565)
chr7 (1-238)||(41734806-41735043)
chr7 (1-170)||(16680537-16680706)
chr7 (1-170)||(17654773-17654942)
chr7 (2-184)||(16488452-16488634)
chr7 (1-184)||(47521767-47521956)
chr7 (1-163)||(19801578-19801740)
chr7 (1-163)||(48406436-48406604)
chr7 (1-163)||(34741799-34741958)
chr7 (1-163)||(9368213-9368381)
chr7 (1-163)||(35607202-35607370)
chr7 (1-163)||(41883618-41883786)
chr7 (1-169)||(5538356-5538530)
chr7 (1-169)||(15071088-15071262)
chr7 (1-169)||(17838031-17838205)
chr7 (1-163)||(17460073-17460241)
chr7 (1-163)||(17592973-17593141)
chr7 (37-184)||(36980660-36980807)
chr7 (1-184)||(27450481-27450666)
chr7 (34-130)||(11630143-11630239)
chr7 (1-163)||(10521908-10522076)
chr7 (1-120)||(42504788-42504913)
chr7 (97-178)||(9491787-9491868)
chr7 (97-184)||(47669996-47670083)
chr7 (1-164)||(13323112-13323280)
chr7 (189-235)||(11630078-11630124)
[»] chr3 (33 HSPs)
chr3 (1-238)||(11380774-11381011)
chr3 (34-238)||(42759754-42759958)
chr3 (1-184)||(20353619-20353802)
chr3 (1-193)||(6928203-6928395)
chr3 (1-178)||(44232789-44232966)
chr3 (9-184)||(16861562-16861743)
chr3 (1-172)||(48891595-48891766)
chr3 (1-169)||(2648377-2648551)
chr3 (1-163)||(34048503-34048671)
chr3 (1-163)||(42900967-42901135)
chr3 (60-193)||(48565957-48566090)
chr3 (1-163)||(50477584-50477752)
chr3 (1-163)||(54389203-54389371)
chr3 (62-178)||(41615394-41615510)
chr3 (1-169)||(46401783-46401957)
chr3 (1-163)||(46698122-46698290)
chr3 (1-169)||(16646573-16646747)
chr3 (3-162)||(49266177-49266342)
chr3 (1-141)||(17562171-17562318)
chr3 (62-169)||(52388414-52388521)
chr3 (1-169)||(2271857-2272031)
chr3 (62-169)||(4005215-4005322)
chr3 (23-169)||(47070987-47071140)
chr3 (1-140)||(599945-600081)
chr3 (62-169)||(9473421-9473528)
chr3 (34-163)||(49141337-49141472)
chr3 (62-169)||(36130615-36130722)
chr3 (1-163)||(50213974-50214142)
chr3 (109-184)||(42804750-42804825)
chr3 (99-238)||(18751920-18752059)
chr3 (97-167)||(30252898-30252968)
chr3 (108-160)||(26334789-26334841)
chr3 (166-228)||(12373946-12374008)
[»] chr8 (22 HSPs)
chr8 (1-193)||(34819397-34819589)
chr8 (32-238)||(5301061-5301267)
chr8 (1-193)||(40075487-40075679)
chr8 (1-184)||(30761068-30761251)
chr8 (1-193)||(35554666-35554858)
chr8 (1-173)||(20859091-20859263)
chr8 (1-167)||(12716091-12716256)
chr8 (1-169)||(15033570-15033744)
chr8 (1-163)||(1055604-1055772)
chr8 (1-163)||(23019098-23019266)
chr8 (1-163)||(26662525-26662693)
chr8 (1-163)||(42482317-42482485)
chr8 (1-184)||(39831541-39831730)
chr8 (1-163)||(22307-22475)
chr8 (1-159)||(486548-486712)
chr8 (2-161)||(52161-52320)
chr8 (95-238)||(45132908-45133050)
chr8 (72-169)||(41239359-41239456)
chr8 (97-238)||(21176081-21176219)
chr8 (62-169)||(34367429-34367536)
chr8 (1-78)||(41242986-41243063)
chr8 (1-68)||(43214462-43214529)
[»] chr4 (30 HSPs)
chr4 (1-238)||(51686192-51686423)
chr4 (1-178)||(50020500-50020677)
chr4 (1-178)||(50196408-50196585)
chr4 (1-193)||(46439098-46439283)
chr4 (95-238)||(41930801-41930944)
chr4 (1-193)||(8110229-8110421)
chr4 (1-193)||(10729781-10729973)
chr4 (1-193)||(10943550-10943742)
chr4 (1-172)||(14317687-14317858)
chr4 (1-169)||(21018397-21018571)
chr4 (1-169)||(30723546-30723720)
chr4 (1-163)||(1305945-1306113)
chr4 (1-163)||(6178615-6178783)
chr4 (1-169)||(41795844-41796018)
chr4 (1-169)||(49168589-49168763)
chr4 (1-173)||(21535045-21535217)
chr4 (37-238)||(50904435-50904636)
chr4 (1-169)||(40355223-40355396)
chr4 (5-163)||(31424822-31424986)
chr4 (1-163)||(49093500-49093668)
chr4 (55-169)||(50278271-50278385)
chr4 (1-173)||(72015-72187)
chr4 (62-169)||(37016409-37016516)
chr4 (30-163)||(44674656-44674795)
chr4 (5-136)||(11081483-11081614)
chr4 (108-170)||(12892091-12892153)
chr4 (199-238)||(30708171-30708210)
chr4 (3-154)||(55278613-55278761)
chr4 (96-155)||(40886456-40886515)
chr4 (108-178)||(13624332-13624402)
[»] chr6 (16 HSPs)
chr6 (1-197)||(24885416-24885612)
chr6 (3-238)||(2405793-2406027)
chr6 (35-238)||(2407336-2407533)
chr6 (1-194)||(26172995-26173187)
chr6 (1-169)||(22304308-22304482)
chr6 (1-163)||(6204227-6204395)
chr6 (1-163)||(11691194-11691362)
chr6 (1-163)||(30826429-30826597)
chr6 (1-184)||(18001601-18001784)
chr6 (1-169)||(27638826-27639000)
chr6 (1-169)||(31771145-31771308)
chr6 (1-163)||(3384506-3384667)
chr6 (1-172)||(3502052-3502237)
chr6 (97-164)||(32641674-32641741)
chr6 (97-184)||(32643068-32643155)
chr6 (97-184)||(24085617-24085704)
[»] chr2 (16 HSPs)
chr2 (97-238)||(7416959-7417100)
chr2 (55-197)||(6637866-6638011)
chr2 (1-163)||(30493772-30493940)
chr2 (1-173)||(39950566-39950744)
chr2 (1-163)||(15834334-15834502)
chr2 (1-167)||(36653303-36653475)
chr2 (1-163)||(43981599-43981767)
chr2 (1-190)||(28471606-28471803)
chr2 (1-163)||(5355049-5355217)
chr2 (97-238)||(25514799-25514931)
chr2 (1-163)||(43536515-43536683)
chr2 (1-190)||(29398389-29398584)
chr2 (97-184)||(40538702-40538789)
chr2 (62-169)||(17423599-17423706)
chr2 (62-160)||(10825732-10825830)
chr2 (102-163)||(3938350-3938411)
[»] scaffold0155 (1 HSPs)
scaffold0155 (108-173)||(12538-12603)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38120138 - 38119901
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||||||    
T  38120138 cctatgacatggttagtgtcgttgttgcctacactgatgcgcagataggtcaagaggaggtcatgagccctcagcagtggtttcagacgatgacccatgt 38120039  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  38120038 tagggaccagatcgtgccgatcttgaccaggaggctaggccaaaggccgaggaggaggcaccggcagcatcagtaggatcaggagtagtaatattttatg 38119939  T
Q  201 -tttaggatatattttcatgacttggtgtatattttca 237  Q
     |||||||||||||||||||||||||||||||||||||    
T  38119938 ttttaggatatattttcatgacttggtgtatattttca 38119901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11196940 - 11197171
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||| ||||||| ||||||||||||| || ||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  11196940 cctatgacatagttagtgccgctgttgcctacgctaatgtgcagttaggtcaggaggaggtcatgagccctcaacagtggtttcaggccatgatccatgt 11197039  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |  ||| |||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| || |||||| |||| ||||   |||||||||| |||    
T  11197040 tgaggagcagatcgcgccgatcttgactaggaggcgaggccagaggccgaagaggaggcaccaacaacatcagcaggaccagg---agtagtatttaatg 11197136  T
Q  201 tttaggatatattttcatgacttggtgtatatttt 235  Q
    |||||||||||||||||||||||||| ||||||||    
T  11197137 tttaggatatattttcatgacttggtatatatttt 11197171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 45828653 - 45828845
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||    
T  45828653 cctatgacatggttagtgccgatgttgcctacgctgatgcgcagataggtcaaggtgaggtcatgagccctcaacagtggtttcaggccatgacccatgt 45828752  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |||| ||||||||| ||||    
T  45828753 tagggagcagatcgcgccgatcttgaccaggaggcgaggctagaggccaaggagaaggcaccagcagcatcagcaggaccaggagtagcagta 45828845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 47660950 - 47661116
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| |||||||||  |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  47660950 cctatgacatggttagtgtcgttgttgcctatgctgatgcgcatataggtcaggaggaggtcatgagccctcaacagcggtttcaggccatgacccatgt 47661049  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcag 167  Q
    |||||| ||||||||||||||||||||||| |||||||||||  || ||| ||||||||||||||||    
T  47661050 tagggagcagatcgcgccgatcttgaccaggaggcgaggccatgggtcgatgaggaggcaccagcag 47661116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23273380 - 23273217
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || ||| |||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  23273380 cctatgacatggttagtgccgttgtagcctacgctgatgcgcagttaggccaggaggaggtcatgagccctcaacagtggtttcaggccatgacccatgt 23273281  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccag 164  Q
    || ||| ||||||||| | ||||||||||| ||||||||||| |||||||||||| ||||||||    
T  23273280 tatggagcagatcgcgtcaatcttgaccaggaggcgaggccagaggccgaggaggtggcaccag 23273217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 22527072 - 22527269
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||      ||||| |||| |||| |||| ||||     
T  22527072 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccagaaggaggtcatgagcatgacccctcagcagtcgtttgaggccatgag 22527171  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagt 192  Q
    |||| ||| ||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  22527172 ccatcttaaggagcagatcgcgcctatcttgaccaggaggcgaggccagaggccgaggaggaggcaccagcagcatcagcaggaccagtagtagtagt 22527269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 51336982 - 51337165
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||| | ||||||||||||| |||||||  |||| || ||| ||||||||||||||||||| || ||||||||||| |||| ||||||    
T  51336982 cctatgacatggttagcggcgctgttgcctacgctgatgcatagattggccaggaggaggtcatgagccctcatcaatggtttcaggccatgagccatgt 51337081  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    ||| || |||||||||||||| ||| |||| ||||||||||| |||| ||||||||||||||||||||||||| |||| |||||    
T  51337082 tagagagcagatcgcgccgatattggccaggaggcgaggccagaggctgaggaggaggcaccagcagcatcagcaggaacagga 51337165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 47505418 - 47505607
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      |||||||||||||||||||| ||||     
T  47505418 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcaacagtggtttcaggccatgag 47505517  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||| |||| || |||||| |||| ||||||||||  ||||||||||| |||||||||||||||||||| ||||||||| |||| |||||    
T  47505518 ccatattagagagcagatcacgcctatcttgaccatgaggcgaggccagaggccgaggaggaggcaccaacagcatcagcaggaccagga 47505607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13636979 - 13636805
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  13636979 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 13636880  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||| ||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  13636879 ccatatgagggagcagatcacgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 13636805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 35256385 - 35256210
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||   |||||||||||||| |||||| || || || ||| |||||||||||||||||||||| |||||||| || |||| | ||||    
T  35256385 cctatgacatggttagcagcgctgttgcctacattgatgcacatattggccaggaggaggtcatgagccctcaacaatggtttcaagccatgagctatgt 35256286  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtag 176  Q
    ||| || |||||||||||||| ||| | || ||||||||||| |||||||||||||| ||||| ||||| ||||||    
T  35256285 tagagagcagatcgcgccgatattggcaaggaggcgaggccagaggccgaggaggagacaccaacagcagcagtag 35256210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19522257 - 19522092
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||  ||||||| ||||| || ||| ||||   ||||||||||||||||||||||||||| ||||  ||| |    
T  19522257 cctatgacatggttagtgccgttgttgcctatgctgatgcacagatgggccaggagga---catgagccctcaacagtggtttcaggccatgagtcatat 19522161  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
     ||||| |||||||||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||    
T  19522160 gagggagcagatcgcgccgattttgaccaagaggcgaggccagaggccgaggaggaggcaccatcagca 19522092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26878787 - 26878955
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  26878787 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 26878886  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  26878887 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 26878955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 19159098 - 19159272
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||||||  |||||||||||| ||||||||||| ||||  || ||||||||||||||      ||||| ||||||||| |||| |||||    
T  19159098 cctatgacatggttagtggtgctgttgcctacgctgatgcgcagttaggctaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 19159197  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||| ||| ||||| |||||||||||||| |||||    
T  19159198 ccatatgagggagcagatcgcgccgattttgaccaggaggcgagcccagaggcccaggaggaggcaccatcagca 19159272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3729322 - 3729154
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| ||||||| | |||| |||||    
T  3729322 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 3729223  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| ||||||||||| || |||||||| ||| ||| ||| ||||||||||||||||||||    
T  3729222 ccatatgagggagcagatcgcgccaattttgaccaggaggagagcccagaggccgaggaggaggcacca 3729154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 21144007 - 21144175
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||| ||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||      |||||  ||||||||||||| ||||     
T  21144007 cctatgacatggtttgtggcgttgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcacgacccctcagtagtggtttcaggccatgag 21144106  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||    
T  21144107 ccatatgagggagcagatcgcgctgattttgaccaggaggcgaggccagaggccgaggaggaggcacca 21144175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 52804945 - 52805119
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      |||||  ||||||||||||| | ||     
T  52804945 cctatgacatggtttgtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagtagtggtttcaggccacgag 52805044  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||| |||||| || |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  52805045 ccatatgagggagcagaccgcgccaattttgaccaggaggcgaggccagaggccgaggaggaggcaccatcagca 52805119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 95020 - 94916
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||    
T  95020 catgacccctcaacagtggtttcaggccatgagccatcttagggagcagatcgcgcctatcttgaccaggaggcgaggctagaggccgaggaggaggcac 94921  T
Q  162 cagca 166  Q
    |||||    
T  94920 cagca 94916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 50617872 - 50617697
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag-------ccctcaacagtggtttcaggcgatga 93  Q
    |||||||||||||| ||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||       |||||| | |||||||||||| ||||    
T  50617872 cctatgacatggtttgtggcgctgttgcctacgctgctgcgcagttaggtcaggaggaggtcatgagcatgaccccctcagctgtggtttcaggccatga 50617773  T
Q  94 cccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
     |||| | ||||| |||||||| ||||| |||||||| ||||||||| | ||||||||||||| ||| || |||||    
T  50617772 gccatatgagggagcagatcgcaccgattttgaccaggaggcgaggctagaggccgaggaggatgcatcatcagca 50617697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31780640 - 31780472
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||  ||  | |||||||||| |||||| |||| |||| ||| |||||  ||||| |||||  ||||||||| |||| |||| |||| |    
T  31780640 cctatgacatggtttatggtgttgttgcctacgctgatgtgcagttaggccaggaggagagcatgacccctcggcagtggttttaggccatgagccatat 31780541  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
     ||||| |||||||||||||| |||||||| ||||||| | | |||||||||||||||||||| |||||    
T  31780540 gagggaacagatcgcgccgattttgaccaggaggcgagcctagaggccgaggaggaggcaccatcagca 31780472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 8548257 - 8548336
Alignment:
Q  85 aggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccag 164  Q
    |||| ||||||||| | ||||| ||||||||| |||| |||||||| ||| ||| |||||||||||||||||||||||||    
T  8548257 aggccatgacccatatgagggagcagatcgcgtcgattttgaccaggaggagagcccaaaggccgaggaggaggcaccag 8548336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 470574 - 470633
Alignment:
Q  110 gatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||    
T  470574 gatcgcgccgattttgaccaggaggcgaggccagaggccgaggaggaggcagcatcagca 470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 49854897 - 49854822
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatca 172  Q
    |||||||| | ||||||| ||||||| | ||||  ||||||||||| |||||||||||||||||||| || |||||    
T  49854897 atgttaggcagcagatcgtgccgatcattaccaagaggcgaggccagaggccgaggaggaggcaccaacaacatca 49854822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 23273218 - 23273168
Alignment:
Q  187 agtagtattttatgtttaggatatattttcatgacttggtgtatattttca 237  Q
    |||||||||||||||| |||||| ||||| | |||||||||||||||||||    
T  23273218 agtagtattttatgttgaggatagatttttaggacttggtgtatattttca 23273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 16269667 - 16269590
Alignment:
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    |||||| ||||||| ||||||||||||||| | ||||||||| ||| |||| ||| |||| || |||||||| |||||    
T  16269667 tagggagcagatcgtgccgatcttgaccaggacgcgaggccagaggtcgagcaggcggcaacaacagcatcaatagga 16269590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38971119 - 38971356
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  38971119 cctatgacatggttagtgccgttgttgcctacgctgatgcgcagataggtcaggaggaggccatgagccctcaacagtggtttcaggccatgacccatgt 38971218  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||    
T  38971219 tagggagcagatcgcgccgatcttgaccaagaggcgaggccaaaggccgaggaggaggcacgagcagcatcagcaggaccaggagtagtaatattttatg 38971318  T
Q  201 tttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38971319 tttaggatatattttcatgtcttggtgtatattttcat 38971356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 42538874 - 42539101
Alignment:
Q  4 atgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttag 103  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||     
T  42538874 atgacatggttagtgtcgctgttgcctacgctgatgcgcaaataggtcaggaggaggtcatgagccctcaacagtggtttcaggccatgacccatgttaa 42538973  T
Q  104 ggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgttt 203  Q
    ||| |||||||||||||| |||||||| |||||       ||| |||||||||||||||||||||||||  ||||  | |||||||||||||||||||||    
T  42538974 ggagcagatcgcgccgattttgaccaggaggcg-------aggtcgaggaggaggcaccagcagcatcaacaggactaagagtagtagtattttatgttt 42539066  T
Q  204 aggatatattttcatgacttggtgtatattttcat 238  Q
    |||||| ||||| | ||||||||||||||||||||    
T  42539067 aggatagatttttaggacttggtgtatattttcat 42539101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 511602 - 511409
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaa-cagtggtttcaggcgatgacccatg 99  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||||||||| ||||| ||||    
T  511602 cctatgacatggttagtgccgttgttgcctacactaatgcgcagataggccaggaggaggtcatgagccttcaagcagtggtttcaggccatgactcatg 511503  T
Q  100 ttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||||  ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||    
T  511502 ttagggagtagatcgcaccgatcttgaccaggaggcgaggccaaaggccgaggaggtggcaccagcagcatcagcagaaccaggagtagcagta 511409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 5199838 - 5200036
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatg------agccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||| |||| |||| ||||||||||| |||| ||| |||||||||||      |||||||| |||||||||||||  ||||     
T  5199838 cctatgacatggttagtggcgccgttgtctacgctgatgcgcagttaggccaggaggaggtcatgagcatgagccctcagcagtggtttcaggtcatgag 5199937  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||| |||||  |||||||    
T  5199938 ccatcttagggagcagatcgcgccgatcttgaccaggaggcgaagccagaggccgaggaggaggcaccagcagcatcagcaggaccaggaccagtagta 5200036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 42937635 - 42937467
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||| || |||| |||||||| ||| |||||| |||||||||||||||||||| |||||| |||| ||||||    
T  42937635 cctatgacatggttagtgccgctgttgcctacgctaatgcacagataggccaggaggagggcatgagccctcaacagtggtatcaggccatgagccatgt 42937536  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||||| ||||| |||||||| ||  | || ||||||||||| |||| ||||||||||||||| |||||    
T  42937535 tagggagcagattgcgccgatattagcaaggaggcgaggccagaggctgaggaggaggcaccatcagca 42937467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 8638 - 8468
Alignment:
Q  5 tgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgacccat 98  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||| ||||||      ||||||||||||||| |||| |||||||||    
T  8638 tgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggttatgagcatgacccctcaacagtggtttgaggccatgacccat 8539  T
Q  99 gttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
     | ||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  8538 atgagggagcagatcgcgccgattttgaccaggaggcgagcccagaggccgaggaggaggcaccatcagca 8468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 8577518 - 8577344
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||||||||||||| |||| |||||    
T  8577518 cctatgacatggttagtggcgttgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcaacagtggtttgaggccatgac 8577419  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| || |||| |||||| |||||||| ||||||| |||||||||||||||||||||||| |||||    
T  8577418 ccatatgagggagcaaatcgtgccgattttgaccaggaggcgagcccaaaggccgaggaggaggcaccatcagca 8577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 15939813 - 15939956
Alignment:
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtat 194  Q
    |||||||||||| |||||||||||||| |||  ||| ||||||||||| |||||||||||| |||||||||| |||||| |  | |||||||||||||||    
T  15939813 ccatgttagggagcagatcgcgccgatattggtcaggaggcgaggccagaggccgaggaggcggcaccagcaacatcagcaacaccaggagtagtagtat 15939912  T
Q  195 tttatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
     |||||||||||||||||||| | ||||||||||||||||||||    
T  15939913 cttatgtttaggatatatttttaggacttggtgtatattttcat 15939956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 40622962 - 40622792
Alignment:
Q  23 tgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatc 122  Q
    |||||||||  | |||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||||||| ||||     
T  40622962 tgttgcctatgcagatgtgcagatgggtcagacggaggtcatgagccctcaacaatggtttcaggccatgagccatgttagagagcagatcgcggcgata 40622863  T
Q  123 ttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    ||| |||| |||| |||||| |||||||||||||||||||| || |||||| |||| ||||| ||| ||||    
T  40622862 ttggccaggaggcaaggccagaggccgaggaggaggcaccaacaacatcagcaggaccaggactagcagta 40622792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 28238712 - 28238544
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  28238712 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgagccctcagcagtggtttgaggccatgac 28238613  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||| |||||||||||||    
T  28238612 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccggggaggaggcacca 28238544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 38407830 - 38407662
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||| ||| || |||||||||| ||||||||||| |||| ||  ||||||||||||||      ||||| |||||||||||||| ||||     
T  38407830 cctatgacatggtttgtggcgttgttgcctacgctgatgcgcagttaggccaagaggaggtcatgagcatgacccctcagcagtggtttcaggccatgag 38407731  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  38407730 ccatatgagggagcagatcgcgccgattttgaccaggaggcgaggccataggccgaggaggaggcacca 38407662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30708125 - 30708291
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||  ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  30708125 cctatgacatggttagtggcgctgttgcctatgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 30708224  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||    
T  30708225 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcac 30708291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19038142 - 19037968
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||  ||||||||||||||      ||||||||||||||| |||| |||||    
T  19038142 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaagaggaggtcatgagcatgacccctcaacagtggtttgaggccatgac 19038043  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| ||||||| ||||||  ||||||| ||| ||| ||| ||||||||| |||||||||| |||||    
T  19038042 ccatatgagggagcagatcgtgccgattctgaccaggaggagagcccagaggccgaggcggaggcaccatcagca 19037968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7761621 - 7761787
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||  ||  |||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| |||||||||||||| ||||     
T  7761621 cctatgacatggtttatggtgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttcaggccatgag 7761720  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    |||| | | ||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||    
T  7761721 ccatatgaaggagcagatcgcaccgattttgaccaggaggcgaggccagaggccgaggaggaggcac 7761787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 28879676 - 28879850
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||| ||||||||||||| || |||| ||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| ||||     
T  28879676 cctacgacatggttagtggcgttgttacctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgat 28879775  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  28879776 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 28879850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 36503485 - 36503413
Alignment:
Q  166 agcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    |||| ||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  36503485 agcaccagcaggatcaagagtagtagtattttatgtttaagatatattttcataacttggtgtatattttcat 36503413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 8699272 - 8699237
Alignment:
Q  132 aggcgaggccaaaggccgaggaggaggcaccagcag 167  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8699272 aggcgaggccagaggccgaggaggaggcaccagcag 8699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37343328 - 37343565
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  37343328 cctatgacatggttagtgtcgttgttgcctacgctgatgcgcagataggtcaggaggaggtcatgagccctcaacagtggtttcagaccatgacccatgt 37343427  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||| | |||||||||||||||||||| || ||||||||||| | ||||| ||||||||||||| |||||||| | || || ||||||||||||||||||    
T  37343428 taggaagcagatcgcgccgatcttgactaggaggcgaggccagaagccgatgaggaggcaccagtagcatcagcaagaccatgagtagtagtattttatg 37343527  T
Q  201 tttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37343528 tttaggatatattttcatgacttggtgtatattttcat 37343565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41734806 - 41735043
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||    
T  41734806 cctatgacatggttagtgtcgttgttgcctacgctgatgcgcatataggtcaggaggaggtcatgagccttcagcagtggtttcaggccatgacccatgt 41734905  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||||| ||||||||||||||||||||||| |||||||  || ||| | |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  41734906 tagggaacagatcgcgccgatcttgaccaggaggcgagttcataggtcaaggaggaggcaccagcagcatcagcaggaccaggagtagtagtattttatg 41735005  T
Q  201 tttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  41735006 tttaggatatagtttcatgacttggtgtatattttcat 41735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 16680537 - 16680706
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| |||||||| |||| ||||||| || ||  | ||| |||||||||||||||||||||||||||||||||| |||| |||| |    
T  16680537 cctatgacatggttagtgccgctgttgtctacgctgatgcacaaatgagccaggaggaggtcatgagccctcaacagtggtttcaggccatgagccatct 16680636  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcat 170  Q
    ||||||  |||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  16680637 tagggagtagatcgcgccgatcttgatcaggaggcgaggtcagaggccgaggaggaggcaccagcagcat 16680706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17654773 - 17654942
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| |||||||| |||| ||||||| || ||  | ||| |||||||||||||||||||||||||||||||||| |||| |||| |    
T  17654773 cctatgacatggttagtgccgctgttgtctacgctgatgcacaaatgagccaggaggaggtcatgagccctcaacagtggtttcaggccatgagccatct 17654872  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcat 170  Q
    ||||||  |||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  17654873 tagggagtagatcgcgccgatcttgatcaggaggcgaggtcagaggccgaggaggaggcaccagcagcat 17654942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 16488452 - 16488634
Alignment:
Q  2 ctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgtt 101  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||| |||||  |||||||||||||||||||||||||||||||||| |||| |||||||    
T  16488452 ctatgacatggttagtgtcgttgttgcctacgctgatgcacagatgggtcaagaggaggtcatgagccctcaacagtggtttcaggccatgagccatgtt 16488551  T
Q  102 agggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    ||||| | |||| ||| ||||||||| || |||||||||||| ||||||  ||| |||| || ||||||||| |||| |||||    
T  16488552 agggagccgatcacgctgatcttgactaggaggcgaggccaagggccgacaaggcggcaacaacagcatcagcaggaccagga 16488634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 47521956 - 47521767
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| |||||| |||| |||| ||| ||||||||| ||||      ||||||||||||||| |||| ||||     
T  47521956 cctatgacatggttagtggcgctgttgcctacgctgatgagcagttaggccaggaggaggtcacgagcatgacccctcaacagtggttttaggccatgag 47521857  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||| ||||||| |||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  47521856 ccatcttagggagcagatcgcgcctgtcttgaccaggaggcgaggccagaggccgaggaggaggcaccagcagcatcagcaggaccagga 47521767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 19801578 - 19801740
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||| |  ||| |||||||||||||||||||  ||||||||||||  |||| |||| |    
T  19801578 cctatgacatggttagtgtcactgttgcctacgctgatgcacagatggtccaggaggaggtcatgagccctcagtagtggtttcaggtcatgaaccatct 19801677  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||||| ||||| ||| |||||||||||||  ||| |||||| ||||||||||||||||||||    
T  19801678 tagggagcagattgcgtcgatcttgaccagggggcaaggccagaggccgaggaggaggcacca 19801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 48406436 - 48406604
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  48406436 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 48406535  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  48406536 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 48406604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34741799 - 34741958
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| ||||||||||  |||||| ||||| || |||   ||||||||||||||||| |||||||||||||| |||| |||| |    
T  34741799 cctatgacatggttagtgtcgttgttgcctacgttgatgcacagatgggccag---gaggtcatgagccctcagcagtggtttcaggccatgagccatat 34741895  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
     ||||| |||||||||||||| |||||||| |||||||||||  ||||||| |||||||||||    
T  34741896 gagggagcagatcgcgccgattttgaccaggaggcgaggccaggggccgagaaggaggcacca 34741958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9368381 - 9368213
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  9368381 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 9368282  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  9368281 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 9368213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35607370 - 35607202
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  35607370 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 35607271  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  35607270 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 35607202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 41883618 - 41883786
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  41883618 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 41883717  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  41883718 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 41883786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 5538530 - 5538356
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||| |||  | |||||||||| ||||||||||| ||||  || ||||||||||||||      ||||| |||||||||||||| ||||     
T  5538530 cctatgacatggtttgtggtgttgttgcctacgctgatgcgcagttaggctaggaggaggtcatgagcatgacccctcagcagtggtttcaggccatgag 5538431  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  5538430 ccatatgagggagcagatcgcgccgattttgaccaggaggcgaggccagaggccgaggaggaggcaccatcagca 5538356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 15071262 - 15071088
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||||||  |||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  15071262 cctatgacatggttagtggagctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 15071163  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    ||||   ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  15071162 ccataagagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 15071088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 17838031 - 17838205
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| |||||||| |||| ||||||||||  |||| ||| ||||||||||||||      ||||| |||||||||||||| ||||     
T  17838031 cctatgacatggttagtggcgctgttgtctacgctgatgcgcacttaggccaggaggaggtcatgagcatgacccctcagcagtggtttcaggccatgag 17838130  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||| ||| |||||||| ||||||| |||||||||||||||| ||||||| |||||    
T  17838131 ccatatgagggagcagatcgcgctgattttgaccagaaggcgagcccaaaggccgaggagggggcaccatcagca 17838205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 17460241 - 17460073
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| |||||| |||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  17460241 cctatgacatggttagtggcgctgttgcctacgctgatgagcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 17460142  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| || ||||| ||| ||| ||| ||||||||||||||||||||    
T  17460141 ccatatgagggagcagatcgcgccgatttttaccaggaggagagcccagaggccgaggaggaggcacca 17460073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17592973 - 17593141
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| |||||| |||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  17592973 cctatgacatggttagtggcgctgttgcctacgctgatgagcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 17593072  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| || ||||| ||| ||| ||| ||||||||||||||||||||    
T  17593073 ccatatgagggagcagatcgcgccgatttttaccaggaggagagcccagaggccgaggaggaggcacca 17593141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 36980660 - 36980807
Alignment:
Q  37 atgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcg 136  Q
    |||| ||||| || ||| |||||||||||||||||||||| |||||| |||| |||| ||||||||| ||  ||||||||||||| ||| |||| |||||    
T  36980660 atgcacagatgggccaggaggaggtcatgagccctcaacaatggttttaggccatgagccatgttagagagaagatcgcgccgatattggccaggaggcg 36980759  T
Q  137 aggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    || ||| |||||||||||||||||| | ||||||||| |||| |||||    
T  36980760 agaccagaggccgaggaggaggcacgaacagcatcagcaggaccagga 36980807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27450666 - 27450481
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||  || ||| |||| |||| ||| ||||||||||||||      ||||| |||||||||||||| ||||     
T  27450666 cctatgacatggttagtg-cgttgttgcctaagcttatgagcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttcaggccatgag 27450568  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
     ||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||   ||||||||| ||||||||| |||| |||||    
T  27450567 tcatcttagggagcagatcgcgcctatcttgaccaggaggcgaggccagaggccgag---gaggcaccaacagcatcagcaggaccagga 27450481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 11630239 - 11630143
Alignment:
Q  34 ctgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccag 130  Q
    ||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||  | ||||||||||||||| ||||||||||||||||| |||||    
T  11630239 ctgatgcacagttaggccagaaggaggtcatgagccctcagcagtggtttcaggtcaggacccatgttagggagcagatcgcgccgatcttcaccag 11630143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 10521908 - 10522076
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||  || |||||||||| ||||||||| | |||| ||| ||||||||||||||      |||||  |||||||| |||| ||||     
T  10521908 cctatgacatggttagtagcgttgttgcctacgctgatgcgcggttaggccaggaggaggtcatgagcatgacccctcagaagtggtttgaggccatgag 10522007  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| ||||||||||| || |||||||| |||| || ||| ||||||||||||||||||||    
T  10522008 ccatatgagggaccagatcgcgccaattttgaccaggaggcaagcccataggccgaggaggaggcacca 10522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42504913 - 42504788
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||| ||||||||||  |||| ||| |||||||||||||      |||||| ||||||||| |||| |||||    
T  42504913 cctatgacatggttagtggcgttgttgcctacgctgatgcgcaattaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 42504814  T
Q  95 ccatgttagggatcagatcgcgccga 120  Q
    |||| | ||||| |||||||||||||    
T  42504813 ccatatgagggagcagatcgcgccga 42504788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 9491868 - 9491787
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    |||||||| | ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  9491868 atgttaggcagcagatcgcgccgatcattaccaggaggcgaggccaaaggccgaggaggaggcaccaccagcaccagcagga 9491787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 47670083 - 47669996
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||||| | ||||||||||||||  | ||||| |||||| |||| ||||||||||||||||||||| |||||||| |||| |||||    
T  47670083 atgttaggcaccagatcgcgccgataattaccaggaggcgatgccagaggccgaggaggaggcaccagtagcatcagcaggaccagga 47669996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 13323112 - 13323280
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||  || ||||||| ||||| ||||||||||| | |  ||| ||||||||||||||      |||||  ||||||||||||| ||||     
T  13323112 cctatgacatggtttttggcgctgttacctacgctgatgcgcagtt-gaccaggaggaggtcatgagcatgacccctcagtagtggtttcaggccatgag 13323210  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccag 164  Q
    |||| | ||||| ||||||||||| ||  ||||||| ||||||||  | || ||||||||||||||||||    
T  13323211 ccatatgagggagcagatcgcgccaattatgaccaggaggcgaggatagagaccgaggaggaggcaccag 13323280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 11630124 - 11630078
Alignment:
Q  189 tagtattttatgtttaggatatattttcatgacttggtgtatatttt 235  Q
    |||||||||||||||| |||| ||||| | |||||||||||||||||    
T  11630124 tagtattttatgtttatgatagatttttaggacttggtgtatatttt 11630078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11381011 - 11380774
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| |||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||  |||||||||||    
T  11381011 cctatgacatggttagtgccgttgttgcctacgctgatgcgcagataggacaggaggaggtcatgagtcctcagcagtggtttcaggtcatgacccatgt 11380912  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||||| ||||||||| |||||||||| || | |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  11380911 tagggagcagatcgcggcgatcttgactaggaagcgaggccaaaggccgaggaggaggcaccagcagcatcaacaggaccaggagtagtagtattttatg 11380812  T
Q  201 tttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||| ||||| | ||||||||||||||||||||    
T  11380811 tttaggatagatttttaggacttggtgtatattttcat 11380774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 42759754 - 42759958
Alignment:
Q  34 ctgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtag 133  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||||||| ||||| || |||||||||||||||||||  ||    
T  42759754 ctgatgcgcagataggtcaggaggaggtcatgaaccctcagcagtggtttcaggccatgacccatgtaagggagcacatcgcgccgatcttgaccaagag 42759853  T
Q  134 gcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgtatatt 233  Q
    ||||||||| ||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759854 gcgaggccagaggccgaggaggaggcaccagcagcattagcaggaccatgagtagtagtattttatgtttaggatatattttcatgacttggtgtatatt 42759953  T
Q  234 ttcat 238  Q
    |||||    
T  42759954 ttcat 42759958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 20353619 - 20353802
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||| |    
T  20353619 cctatgacatggttagtgtcgttgttgcttacgctgatgcgcagttaggccaggaggaggtcatgagccctcatcagtggtttcaggccatgacccatct 20353718  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    | |||| ||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  20353719 tggggagcagatcgcgccgatcatgaccaggagacgaggccagaggccgaggaggaggcaccagcagcatcagcaggaccagga 20353802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 6928203 - 6928395
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||||||||||| |||| ||||||| |||||| |||||||||||||| ||||| | |||    
T  6928203 cctatggcatggttagtgtcgtagttgcctacgctgatgcgcagataggtcaggaggatgtcatgatccctcagcagtggtttcaggccatgactcgtgt 6928302  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||||||||||||||||||| ||||||||||| | ||| ||||||| ||||||||| |||||| |||| ||||||||| ||||    
T  6928303 tagggagcagatcgcgccgatcttgaccaggaggcgaggccagatgccaaggaggatgcaccagcaccatcagcaggaccaggagtagcagta 6928395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 44232789 - 44232966
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| |||||| |||  |||| ||| |||||||||||||||||||||||||||||||||| || | |||| |    
T  44232789 cctatgacatggttagtgccgttgttgcctacgctgatgtgcaattaggccaggaggaggtcatgagccctcaacagtggtttcaggccataagccatct 44232888  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    |||||| |||| |||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||| ||||    
T  44232889 tagggagcagaacgcgccgatcttgaccaggaggcgagcccataggtcgaggaggaggcaccagcagcatcagcagga 44232966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 16861743 - 16861562
Alignment:
Q  9 atggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgacccatgtta 102  Q
    |||||||||| ||||||||||||| ||||||| ||| |||| ||| ||||||||||||||      ||||| |||||||||||||| |||| |||| |||    
T  16861743 atggttagtggcgctgttgcctacgctgatgcacagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttcaggccatgagccatctta 16861644  T
Q  103 gggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    | || ||||| |||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  16861643 gagagcagattgcgctgatcttgaacaggaggcgaggccagaggccgaggaggaggcaccagcagcatcagtaggaccagga 16861562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 48891595 - 48891766
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||| | || |||||||||| ||||||| |||||  | ||||||||||||||||||||||| || ||||||||||| |||| ||||||    
T  48891595 cctatgacatggttagcggcgttgttgcctacgctgatgcacagatgagccagaaggaggtcatgagccctcagcaatggtttcaggccatgagccatgt 48891694  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatca 172  Q
    ||| || ||||||||| |||| |||  ||| |||| |||||| |||| ||||||||||||||||||||||||    
T  48891695 tagagagcagatcgcgtcgatattggtcagaaggcaaggccagaggctgaggaggaggcaccagcagcatca 48891766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 2648551 - 2648377
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||| | ||||||||| |||| |||||    
T  2648551 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgaccccttagcagtggtttgaggccatgac 2648452  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  2648451 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 2648377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34048503 - 34048671
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  34048503 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 34048602  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  34048603 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 34048671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 42901135 - 42900967
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  42901135 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 42901036  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  42901035 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 42900967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 48565957 - 48566090
Alignment:
Q  60 gtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggc 159  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||  |||||| ||||||||||||||||    
T  48565957 gtcatgagccctcagcagtggttgcaggccatgacccatgttagggagcagatcgcgccgatcttgaccaggagggtaggccagaggccgaggaggaggc 48566056  T
Q  160 accagcagcatcagtaggatcaggagtagtagta 193  Q
    |||| || |||||  | || ||||||||| ||||    
T  48566057 accaacaacatcaacaagaccaggagtagcagta 48566090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 50477752 - 50477584
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| ||||||| | |||| |||||    
T  50477752 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 50477653  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||| ||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  50477652 ccatatgagggagcagatcgcgctgattttgaccaggaggagagcccagaggccgaggaggaggcacca 50477584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 54389203 - 54389371
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||  ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  54389203 cctatgacatggttagtggcgctgttgcctatgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 54389302  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  54389303 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 54389371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 178
Target Start/End: Original strand, 41615394 - 41615510
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  41615394 catgagccctcaacagtggtttcaggccatgagccatcttagggagcagattgcgccgatcttgaccaggaggtgaggccagaggccgaggaggaggcac 41615493  T
Q  162 cagcagcatcagtagga 178  Q
    || || |||||| ||||    
T  41615494 caacaacatcagcagga 41615510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46401783 - 46401957
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||  ||||||||||||||      ||||||||||||||| |||| |||||    
T  46401783 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaagaggaggtcatgagcatgatccctcaacagtggtttgaggccatgac 46401882  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| ||||||||||||||  ||||||| ||| ||  ||| ||||||||| |||||||||| |||||    
T  46401883 ccatatgagggagcagatcgcgccgattctgaccaggaggagaacccagaggccgaggcggaggcaccatcagca 46401957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 46698290 - 46698122
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| |||| |||| ||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  46698290 cctatgacatggttagtggcgctattgcatacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 46698191  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  46698190 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 46698122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 16646573 - 16646747
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||  ||  | |||| ||||||||||||||||  |||| ||| ||||||||||||||      |||||||||||||||||||| ||||     
T  16646573 cctatgacatggtttatggtgttgtttcctacactgatgcgcaattaggccaggaggaggtcatgagcatgacccctcaacagtggtttcaggccatgag 16646672  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| ||||||| |||||| |||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  16646673 ccatatgagggagcagatcgtgccgattttgaccaggaggcgaggccagaggtcgaggaggaggcaccatcagca 16646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 49266342 - 49266177
Alignment:
Q  3 tatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgaccc 96  Q
    |||||||||||||||| || |||||||||| ||||||||||| |||| ||  ||||||||||||||      ||| | |||||||||||||| || | ||    
T  49266342 tatgacatggttagtggcgatgttgcctacgctgatgcgcagttaggccatgaggaggtcatgagcatgaccccttagcagtggtttcaggccatcagcc 49266243  T
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacc 162  Q
    || ||||||| ||||| |||||  |||||||||| ||||||||||| |||||||||||||||||||    
T  49266242 atcttagggagcagattgcgcctgtcttgaccaggaggcgaggccagaggccgaggaggaggcacc 49266177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17562318 - 17562171
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag-------ccctcaacagtggtttcaggcgatga 93  Q
    |||||||||||||||||| || |||||||||| ||||||||||| |||| ||| |||||||||||||       |||||| || ||||||||||| ||||    
T  17562318 cctatgacatggttagtggcgttgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgaccccctcagcaatggtttcaggccatga 17562219  T
Q  94 cccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggcc 141  Q
     |||| ||||||| ||||||||||| ||||||||||| ||||||||||    
T  17562218 gccatcttagggagcagatcgcgcctatcttgaccaggaggcgaggcc 17562171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 52388521 - 52388414
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||| | |||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  52388521 catgaccccttagcagtggtttcaggccatgacccatatgagggagcagatcgcgccaatcttgaccaggaggcgaggccagaggccgaggaggaggcac 52388422  T
Q  162 cagcagca 169  Q
    || |||||    
T  52388421 catcagca 52388414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 2272031 - 2271857
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| ||||     
T  2272031 cctatgacatgattagtggcgctgttgcctatgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgag 2271932  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||| | |||||| |||| || ||||| || ||||||| ||| |||||||||||||||||||| |||||    
T  2271931 ccatatgaggaagcagatcacgccaattttgactaggaggcgagcccagaggccgaggaggaggcaccatcagca 2271857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 4005322 - 4005215
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||||| |||||||||||||| ||||||||| | ||||| ||||||| ||||||||||||||  |||| |||||| ||||||||||||||||||    
T  4005322 catgacccctcagcagtggtttcaggccatgacccatatgagggagcagatcgtgccgatcttgaccaagaggcaaggccagaggccgaggaggaggcac 4005223  T
Q  162 cagcagca 169  Q
    || |||||    
T  4005222 catcagca 4005215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 47071140 - 47070987
Alignment:
Q  23 tgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggttt-caggcgatgacccatgttagggatcagatcgc 115  Q
    |||||||| | ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| ||||| |||| |||| | ||||| ||||||||    
T  47071140 tgttgcctgcgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggttttcaggccatgagccatatgagggagcagatcgc 47071041  T
Q  116 gccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||||| |||||||| |||||| |||| |||||||||||||||||||| |||||    
T  47071040 gccgattttgaccaggaggcgatgccagaggccgaggaggaggcaccatcagca 47070987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 599945 - 600081
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | |  ||    |||||||||||||| || |||||||||||||| |||| |||| |    
T  599945 cctacgacatggttagtgccgctgttgcctacactgatgcacagttggcccaa---gaggtcatgagcccccagcagtggtttcaggccatgagccatat 600041  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggc 140  Q
     ||||| |||||||||||||| |||||||| |||||||||    
T  600042 gagggagcagatcgcgccgattttgaccaggaggcgaggc 600081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 9473421 - 9473528
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||| | |||| ||||||||| ||||||||| | ||||| |||||||||||||||||||| || |||||||| || ||||||||||||||||||    
T  9473421 catgaccccttagcagtagtttcaggccatgacccatatgagggagcagatcgcgccgatcttgactaggaggcgaggtcagaggccgaggaggaggcac 9473520  T
Q  162 cagcagca 169  Q
    || |||||    
T  9473521 catcagca 9473528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 49141472 - 49141337
Alignment:
Q  34 ctgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgac 127  Q
    ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| ||||||||| | ||||| |||||||||||||| |||||    
T  49141472 ctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgacccatatgagggagcagatcgcgccgattttgac 49141373  T
Q  128 cagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    ||| ||| ||| ||| ||||||||||||||||||||    
T  49141372 caggaggagagcccagaggccgaggaggaggcacca 49141337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 36130615 - 36130722
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||||| |||||||||||| | ||||| ||| | ||||| ||||||||||||||||||||||  | || |||||| ||||||||||||||||||    
T  36130615 catgacccctcagcagtggtttcagtccatgacgcatatgagggagcagatcgcgccgatcttgaccaagatgcaaggccagaggccgaggaggaggcac 36130714  T
Q  162 cagcagca 169  Q
    || |||||    
T  36130715 catcagca 36130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 50214142 - 50213974
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||| | ||| || ||||||||||  |||||||||| |||| ||| || ||||||| |||      | ||| | |||||||||||| ||||     
T  50214142 cctatgacatggattgtggcgttgttgcctacgttgatgcgcagttaggccaggagaaggtcataagcattacccatcagctgtggtttcaggccatgag 50214043  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | || || |||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||    
T  50214042 ccatataagagagcagatcgcgccgattttgactaggaggcgaggccagaggccgaggaggaggcacca 50213974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 42804825 - 42804750
Alignment:
Q  109 agatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||||||| ||| | ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  42804825 agatcgcgccaatcattaccaggaggcgaggccagaggccgaggaggaggcaccaacagcatcagtaggaccagga 42804750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 18751920 - 18752059
Alignment:
Q  99 gttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtatttta 198  Q
    |||||| | ||||||||||||||| ||||||| |  || ||||| ||||||||||||||||| || || |||||| | || || |||||||| ||||||     
T  18751920 gttaggaagcagatcgcgccgatcatgaccaggaaacggggccagaggccgaggaggaggcaacaccaacatcagcaagaccaagagtagtaatattttc 18752019  T
Q  199 tgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    | ||||||||| ||||| | ||||   |||||||||||||    
T  18752020 tatttaggatagatttttaggactatatgtatattttcat 18752059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 30252968 - 30252898
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcag 167  Q
    |||||||| | ||||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||||||    
T  30252968 atgttaggcagcagatcgcgccgatcattacctggaggcgaggccagaggccgaggaggaggcaccagcag 30252898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 26334841 - 26334789
Alignment:
Q  108 cagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggca 160  Q
    |||||||||||||| |||||||| || |||||||| |||||||||||| ||||    
T  26334841 cagatcgcgccgatattgaccaggagacgaggccagaggccgaggaggcggca 26334789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 12373946 - 12374008
Alignment:
Q  166 agcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgt 228  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||| | ||||| | ||||||||||    
T  12373946 agcatgagtaggatcagcagtaggagtattttatgtttcggacagatttttaggacttggtgt 12374008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 34819589 - 34819397
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||    
T  34819589 cctatgacatggttagtgccgttgttgcctacgctgatacgcagataggtcaggaggaggtcatgagccctcagcagtggtttcaggccataacccatgt 34819490  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  34819489 tagggagcagatcgcgccgatcttgaccaggaggcgaggccagaggccgaggaggaggcaccagcagcatcagcaggaccaggagtagcagta 34819397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 5301267 - 5301061
Alignment:
Q  32 cactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagt 131  Q
    ||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||  ||||||||||||||||||| ||     
T  5301267 cactgatgcgcagttaggccaggaggaggtcatgagccctcagcagtggtttcaggccatgatccatgttagggagtagatcgcgccgatcttgactagg 5301168  T
Q  132 aggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgtata 231  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| || ||  ||||||||||||||||||||||||||||| | |||||||||||||    
T  5301167 aggcgaggccagaggccgaggaggaggcaccagcagcatcagcaggaccaagaccagtagtattttatgtttaggatatatttttaggacttggtgtata 5301068  T
Q  232 ttttcat 238  Q
    |||||||    
T  5301067 ttttcat 5301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40075679 - 40075487
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||   ||||||||||| || ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  40075679 cctatgacatggttagtgctactgttgcctacgctaatgcgcagataggccaggaggaggtcatgagccctcagcagtggtttcaggccatgacccatgt 40075580  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| ||||    
T  40075579 tagggagcagatcgcgccgatcttgaccatgaggcgaggccagaggccgaggaggaggcaccagcaacatcagcaggaccaggagtagcagta 40075487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 30761251 - 30761068
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||  | ||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  30761251 cctatgacatggttagtgccgctgttgcctacgctgatgcacagatgtgccaggaggaggtcatgagccctcaacagtggtttcaggccatgagccatgt 30761152  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||| |||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  30761151 tagggagcagatcgcgccgatattggccaggaggcgaggccagaggccgaggaggaggcaccagcagcatcagtaggaccagga 30761068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 35554666 - 35554858
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| |||||||||| ||||||||| ||||| ||||||||||||| || ||||||||||| |||||||||||    
T  35554666 cctatgacatggttagtgccgttgttgcctacgctgatgcgcaaataggtcaggaggagttcatgagccctcagcaatggtttcaggccatgacccatgt 35554765  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||| |||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||| |||| ||||||||| ||||    
T  35554766 tagggagcagatcgtgccgattttgaccaggaggcgaggacagaggccgaggaggaggcaccagcaccatcagcaggaccaggagtagcagta 35554858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 20859091 - 20859263
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||||||||||| ||||| || ||| ||||||||||||||||||| |||||||||||||| |||| |||| |    
T  20859091 cctatgacatggttagtgccgttgttgcctacactgatgcacagatgggccaggaggaggtcatgagccctcagcagtggtttcaggccatgagccatct 20859190  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcag 173  Q
    |||||| || |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  20859191 tagggagcaaatcgcgccgatcttgaccaagaggcgaggccagaggccgaggaggaggcaccagcagcatcag 20859263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 12716256 - 12716091
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||| |||||| |||||||||||||  ||||||| |||||||| || |||| ||||||    
T  12716256 cctatgacatggttagtgccgctattgcctatgctgatgcgcagatgggtcaggaggaggtcatgagttctcaacaatggtttcaagccatgagccatgt 12716157  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcag 167  Q
    |||||| |||||||||||||| ||||  || ||||||||||| |||||||||||| |||| ||||||    
T  12716156 tagggagcagatcgcgccgatattga-taggaggcgaggccagaggccgaggaggcggcaacagcag 12716091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 15033744 - 15033570
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||  |||| ||| ||||||||||||||      |||||  |||||||| |||| |||||    
T  15033744 cctatgacatggttagtggcgctgttgcctacgctgatgcgcaattaggccaggaggaggtcatgagcatgacccctcagtagtggtttgaggccatgac 15033645  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  15033644 ccatatgagggagcagatcgcgccgattttgaccaggaggcgagcccagaggccgaggaggaggcaccatcagca 15033570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 1055604 - 1055772
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  1055604 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 1055703  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  1055704 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 1055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23019266 - 23019098
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  23019266 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 23019167  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  23019166 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 23019098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26662525 - 26662693
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  26662525 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 26662624  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  26662625 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 26662693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 42482485 - 42482317
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| || | ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  42482485 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttatgccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 42482386  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  42482385 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 42482317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 39831730 - 39831541
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||  |||||| |||| |||| ||| |||||| |||||||      ||||| |||||||| ||||| || |     
T  39831730 cctatgacatggttagtggcgttgttgcctatgctgatgagcagttaggccaggaggaggccatgagcatgacccctcagcagtggttccaggccataag 39831631  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||| || |||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||| |||| |||||    
T  39831630 ccatctttgggagcagatcgcgcctatcttgaccaggaggcgaggccagaggccgaggaggatgcaacagcagcatcagcaggaccagga 39831541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 22475 - 22307
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| ||||   | ||||||||||||||      ||||| ||||||| | |||| |||||    
T  22475 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggcggggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 22376  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||| | ||| ||| ||||||||||||||||||||||||    
T  22375 ccatatgagggagcagatcgcgccgattttgacctggaggagagcccaaaggccgaggaggaggcacca 22307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 486712 - 486548
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      ||| || ||||||| | |||| |||||    
T  486712 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgaccccacagcagtggtatgaggccatgac 486613  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggc 159  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||    
T  486612 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggc 486548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 52161 - 52320
Alignment:
Q  2 ctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgtt 101  Q
    ||||||||||||||| | || |||||||||| ||||||| ||||| || | | ||||||||||||||||||| || ||||||||||| |||| |||||||    
T  52161 ctatgacatggttagcggcgttgttgcctactctgatgcacagatgggcctggaggaggtcatgagccctcagcaatggtttcaggccatgagccatgtt 52260  T
Q  102 agggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    |  || |||||| ||||||| ||| |||| ||||||||||| | |||||||||| |||||    
T  52261 aaagagcagatcacgccgatattggccaggaggcgaggccacatgccgaggagggggcac 52320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 45132908 - 45133050
Alignment:
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtat 194  Q
    |||||| || || |||||| ||||||| ||| |||| ||| ||||||| |||||||||||| ||||||||||||||||  | || || ||||||||||||    
T  45132908 ccatgtaagagagcagatcacgccgatattggccaggaggagaggccagaggccgaggaggcggcaccagcagcatcaacaagaccatgagtagtagtat 45133007  T
Q  195 tttatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||    
T  45133008 tttatgtttaggatatatttttaggactt-gtgtatattttcat 45133050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 41239456 - 41239359
Alignment:
Q  72 caacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    ||||||||||||||||| |||| |||| | ||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  41239456 caacagtggtttcaggccatgagccatatgagggagcagatcgtgccgattttgaccaggaggcgaggccagaggccgaggaggaggcaccatcagca 41239359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 21176219 - 21176081
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattt 196  Q
    |||||||||| |||||||||||| || ||||||| ||||||||| | ||||| ||| ||||||| || || |||||| |||||     ||||||||||||    
T  21176219 atgttagggagcagatcgcgccgttcatgaccaggaggcgaggctagaggccaaggtggaggcaacaacaacatcagcaggat---acgtagtagtattt 21176123  T
Q  197 tatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    | ||||||||||| ||||| | ||||||||||||||||||||    
T  21176122 tctgtttaggatagatttttaggacttggtgtatattttcat 21176081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 34367536 - 34367429
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||||| |||||||||||||| |||| |||| | ||||| |||||||||| ||| |||||||| |||||||||||  ||||||||||||||||     
T  34367536 catgacccctcagcagtggtttcaggccatgagccatatgagggagcagatcgcgctgattttgaccaggaggcgaggccaggggccgaggaggaggcag 34367437  T
Q  162 cagcagca 169  Q
    || |||||    
T  34367436 catcagca 34367429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41243063 - 41242986
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagt 78  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||| || ||| |||||||||| |||||||||||||    
T  41243063 cctatgacatggttagtgccgctgttgcctaccctgatgcacagatgggccaggaggaggtcataagccctcaacagt 41242986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43214462 - 43214529
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc 68  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||    
T  43214462 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagc 43214529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51686192 - 51686423
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||| |||||||||||||||||| |||| |||||||||||    
T  51686192 cctatgacatggttagtgccgctgttgcctacgctgatgcgcagttaggccaggaggaggtcataagccctcaacagtggttttaggccatgacccatgt 51686291  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatg 200  Q
    |||||| ||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| || ||||||      |||||  ||||||||||||||    
T  51686292 tagggagcagatcgcgccgatcttgaccatgaggcgaggccagaggccgaggaggaggcaccaacaacatcag------caggaccagtagtattttatg 51686385  T
Q  201 tttaggatatattttcatgacttggtgtatattttcat 238  Q
    |||| |||| ||||| | ||||||||||||||||||||    
T  51686386 tttatgatagatttttaggacttggtgtatattttcat 51686423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 50020677 - 50020500
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| || ||| ||||||||||| |||||||  ||||||||||||| |||| |||| |    
T  50020677 cctatgacatggttagtgccgctgttgcctacactgatgcacagatgggccaggaggaggtcatgggccctcagtagtggtttcaggccatgagccatct 50020578  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    || ||| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||    
T  50020577 tatggagcaaatcgcgccgatcttgaccaggaggcgaggccaaaggctgaggaggaggcaccagaagcatcagcagga 50020500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 50196408 - 50196585
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||| || ||| ||||||||||||||||| |||||||||||||||| |||| |||| |    
T  50196408 cctatgacatggttagtgccgctgttgcctacgctgatgcacagatgggccaggaggaggtcatgagcccttaacagtggtttcaggccatgagccatct 50196507  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    |||||| |||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| || || |||||| ||||    
T  50196508 tagggagcagatcgcaccgatcttgaccaggaggtgaggccagaggccgaggaggaggcatcaacaacatcagcagga 50196585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 46439098 - 46439283
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||| |||||||| |  ||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  46439098 cctatgacatggttagtgtcgttgttgcctgcgttgatgcgcatatagatcaggaggaggtcatgagccctgaacagtggtttcaggccatgacccatgt 46439197  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| ||||||||| ||||||||||||| |||||       || ||||||||||||||||||||| ||||| |||| ||||||||| ||||    
T  46439198 tagggagcagatcgcgtcgatcttgaccaggaggcg-------agaccgaggaggaggcaccagcagtatcagcaggaccaggagtagcagta 46439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 95 - 238
Target Start/End: Complemental strand, 41930944 - 41930801
Alignment:
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtat 194  Q
    |||||||||||| |||||||||| ||| ||| |||| ||||||||||| ||| | |||||| ||||||||||||||||| |||| |||||||| ||||||    
T  41930944 ccatgttagggagcagatcgcgctgatattggccaggaggcgaggccagaggtcaaggaggcggcaccagcagcatcagcaggaccaggagtaatagtat 41930845  T
Q  195 tttatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41930844 tttatgtttaggatatattttcatgacttggtgtatattttcat 41930801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8110229 - 8110421
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||  || ||| ||||||||||||  ||||||| ||||| || ||| |||||||||||||| ||||  ||||||||||||| |||| ||||||    
T  8110229 cctatgacatatttcgtgccgctgttgcctatgctgatgcacagatgggccaggaggaggtcatgagctctcagtagtggtttcaggccatgagccatgt 8110328  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| |||||||||||||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |||| |||||  |||||||    
T  8110329 tagggagcagatcgcgccgatattggccaggaggggaggccagaggccgaggaggaggcaccagcagcatcagcaggaccaggaccagtagta 8110421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10729973 - 10729781
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||| | || |||||||||| ||||||||||||| || |||  ||||||||||||||||||||| ||||||||||| |||| | ||||    
T  10729973 cctatgacatggttagcggcgttgttgcctacgctgatgcgcagatgggccaggcggaggtcatgagccctcaacaatggtttcaggccatgagctatgt 10729874  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| |||||| ||||||| ||| |||  ||| ||||||| |||||||||||| |||| || || |  |||||||||||||||||||||||    
T  10729873 tagggaccagatcacgccgatattggccaagaggtgaggccagaggccgaggaggcggcaacaacaactacagtaggatcaggagtagtagta 10729781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10943742 - 10943550
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||| | || |||||||||| ||||||||||||| || |||  ||||||||||||||||||||| ||||||||||| |||| | ||||    
T  10943742 cctatgacatggttagcggcgttgttgcctacgctgatgcgcagatgggccaggcggaggtcatgagccctcaacaatggtttcaggccatgagctatgt 10943643  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagta 193  Q
    |||||| |||||| ||||||| ||| |||  ||| ||||||| |||||||||||| |||| || || |  |||||||||||||||||||||||    
T  10943642 tagggaccagatcacgccgatattggccaagaggtgaggccagaggccgaggaggcggcaacaacaactacagtaggatcaggagtagtagta 10943550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 14317687 - 14317858
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||| ||||| |  |||||||||||| |||| |||||||| || |||  ||||||||||||||||||||| |||||||| || |||| ||||||    
T  14317687 cctatgacattgttagcggtgctgttgcctacgctgacgcgcagatgggccaggcggaggtcatgagccctcaacaatggtttcaagccatgagccatgt 14317786  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatca 172  Q
    ||| || |||||||||||||| ||| |||| ||||||||||| ||| |||||||||||||||||||||||||    
T  14317787 tagagagcagatcgcgccgatgttggccaggaggcgaggccagaggacgaggaggaggcaccagcagcatca 14317858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 21018571 - 21018397
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||| || ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  21018571 cctatgacatggttaatggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 21018472  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||||    
T  21018471 ccatatgagggagcagatcgcgccgattttgaccaggaggcgagcccagaggccgaggaggaggcaccatcagca 21018397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 30723720 - 30723546
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  30723720 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 30723621  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  30723620 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 30723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1306113 - 1305945
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  1306113 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 1306014  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  1306013 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 1305945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 6178783 - 6178615
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  6178783 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 6178684  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  6178683 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 6178615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 41796018 - 41795844
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||  ||||||||||||||      ||||||||||||||| |||| |||||    
T  41796018 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaagaggaggtcatgagcatgacccctcaacagtggtttgaggccatgac 41795919  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| ||||||||||||||  ||||||| ||| ||| ||| ||||||||| |||||||||| |||||    
T  41795918 ccatatgagggagcagatcgcgccgattctgaccaggaggagagcccagaggccgaggcggaggcaccatcagca 41795844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 49168589 - 49168763
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  49168589 cctatggcatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 49168688  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| ||||||||| |||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  49168689 ccatatgagggagcagatcgcgtcgattttgaccaggaggagagcccataggccgaggaggaggcaccatcagca 49168763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21535217 - 21535045
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| ||||||||||||| ||||||| || || ||| || ||||||||||||||||||| || || |||||||| |||| ||||||    
T  21535217 cctatgacatggttagtgccgctgttgcctacgctgatgcacaaatgggttaggaggaggtcatgagccctcagcaatgatttcaggccatgagccatgt 21535118  T
Q  101 tagggatcagatcgcgccgatcttgac-cagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcag 173  Q
    |||||| ||||||||| |||| ||||| ||| |||| |||||| |||||||||||| |||| || || ||||||    
T  21535117 tagggagcagatcgcgtcgatattgacacag-aggcaaggccagaggccgaggaggcggcaacaacaacatcag 21535045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 50904435 - 50904636
Alignment:
Q  37 atgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcg 136  Q
    |||| ||||| || ||| ||||||||||| ||||||| ||||||| |||||| |||| |||||||||||| || ||||||||||| ||  |||| ||||     
T  50904435 atgcacagatgggccaggaggaggtcatgggccctcagcagtggtatcaggccatgagccatgttagggagcatatcgcgccgatattagccaggaggca 50904534  T
Q  137 aggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgtatattttc 236  Q
    | ||||||| ||||||||||||||||| |||||  |    || ||||| |||||||||||||| ||||||||| ||||| | |||||| |||||||||||    
T  50904535 acgccaaagaccgaggaggaggcaccatcagcaggaccgagaccaggactagtagtattttatttttaggataaatttttaggacttgatgtatattttc 50904634  T
Q  237 at 238  Q
    ||    
T  50904635 at 50904636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 40355396 - 40355223
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  40355396 cctatgacatggttagtggcgttgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 40355297  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||| | |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  40355296 ccatatgagg-agcagatcgcgccgattttgaccaggaggagagcccataggccgaggaggaggcaccatcagca 40355223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 31424822 - 31424986
Alignment:
Q  5 tgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgacccat 98  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||||||    
T  31424822 tgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgacccat 31424921  T
Q  99 gttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
     | ||||| |||||| ||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  31424922 atgagggagcagatcacgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 31424986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 49093500 - 49093668
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| ||||||| | |||| |||||    
T  49093500 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 49093599  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| ||||||||||||||  ||||||| ||| ||| ||| |||| |||||||||||||||    
T  49093600 ccatatgagggagcagatcgcgccgattctgaccaggaggagagcccagaggctgaggaggaggcacca 49093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 50278271 - 50278385
Alignment:
Q  55 aggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggag 154  Q
    |||||||||||||||||| ||||||||||||||| |||| |||| | ||||| ||||||| |||||| |||||||| ||||| ||||| |||||||||||    
T  50278271 aggaggtcatgagccctctacagtggtttcaggccatgagccatatgagggagcagatcgagccgattttgaccaggaggcggggccagaggccgaggag 50278370  T
Q  155 gaggcaccagcagca 169  Q
    ||||||||| |||||    
T  50278371 gaggcaccatcagca 50278385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 72015 - 72187
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||| | || |||||||||  ||||||| ||||| |  ||| || |||||||||||||||| || ||||||||||| |||| ||||||    
T  72015 cctatgacatggttagcggcgttgttgcctatgctgatgcacagatggcccaggagtaggtcatgagccctcagcaatggtttcaggccatgagccatgt 72114  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcag 173  Q
    ||| ||  |||||| |||||| ||| |||| |||| |||| | |||| ||||||||||||| |||||||||||    
T  72115 tagagagtagatcgtgccgatattggccagaaggcaaggctagaggctgaggaggaggcactagcagcatcag 72187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 37016516 - 37016409
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||||| |||||||||||||| |||| | || | ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  37016516 catgacccctcagcagtggtttcaggccatgagcaatatgagggagcagatcgcgccgattttgactagaaggcgaggccagaggccgaggaggaggcac 37016417  T
Q  162 cagcagca 169  Q
    || |||||    
T  37016416 catcagca 37016409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 44674795 - 44674656
Alignment:
Q  30 tacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatct 123  Q
    ||||||||||| ||| |||| ||| ||||||||||||||      ||||   ||||||||||||| |||| |||| | ||||| |||||||||||||| |    
T  44674795 tacactgatgctcagttaggccaggaggaggtcatgagcatgacccctcggtagtggtttcaggccatgagccatatgagggagcagatcgcgccgattt 44674696  T
Q  124 tgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| || ||||||||||| ||||||||||||||||||||    
T  44674695 tgactaggaggcgaggccagaggccgaggaggaggcacca 44674656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 11081614 - 11081483
Alignment:
Q  5 tgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagg 104  Q
    |||||||||||||| || ||||||||||  ||||||||| || |||||||   |||| |||| |||| |  | ||||||||||| |||||||||||||||    
T  11081614 tgacatggttagtggcgatgttgcctacgttgatgcgcatatgggtcagacaaaggttatgacccctgagtaatggtttcaggccatgacccatgttagg 11081515  T
Q  105 gatcagatcgcgccgatcttgaccagtaggcg 136  Q
    ||  ||||| ||||||| |||||||| |||||    
T  11081514 gagaagatcacgccgatattgaccaggaggcg 11081483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 12892091 - 12892153
Alignment:
Q  108 cagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcat 170  Q
    ||||||| |||||| |||||||| ||||||||||| |||||||||||| |||| |||||||||    
T  12892091 cagatcgtgccgatattgaccaggaggcgaggccagaggccgaggaggcggcaacagcagcat 12892153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 30708171 - 30708210
Alignment:
Q  199 tgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  30708171 tgtttaggatatattttcattacttggtgtatattttcat 30708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 55278761 - 55278613
Alignment:
Q  3 tatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgtta 102  Q
    ||||||||||||||||  | |||||||||  |||||| |||||| ||||||   ||||| |||| |||| | || |||||| |||| |||  |||| |||    
T  55278761 tatgacatggttagtggtgttgttgcctatgctgatgagcagatgggtcag---gaggtgatgaaccctgagcaatggtttgaggccatgcaccatatta 55278665  T
Q  103 gggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggag 154  Q
    |||| || ||| | ||||| |||||||  ||||||||||  |||||||||||    
T  55278664 gggagcatatcacaccgatattgaccaagaggcgaggccggaggccgaggag 55278613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 40886515 - 40886456
Alignment:
Q  96 catgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggagg 155  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||| ||| ||||||||||||    
T  40886515 catgttagggagcagattgcaccgatattgaccaggaggcgagcccagaggccgaggagg 40886456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 13624402 - 13624332
Alignment:
Q  108 cagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtagga 178  Q
    ||||| ||| ||||| | ||||| ||||||||||| | |||||||||||||||||| ||||| ||| ||||    
T  13624402 cagattgcgtcgatcattaccaggaggcgaggccagatgccgaggaggaggcaccaacagcaccagcagga 13624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24885612 - 24885416
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||    
T  24885612 cctatgacatggttagtgtcgctgttgcctacgatgatgcgcagataggtcaggaggaggtcatgagccctcagcagttgtttcaggccatgacccatgt 24885513  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtatttt 197  Q
    |||||| | |||||| |||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||    
T  24885512 tagggagcggatcgcaccgatcttgagcaggaggcgaggccagaggccgagaaggaggcaccagcagcatcagcaggaccaggagtagtaatatttt 24885416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 2406027 - 2405793
Alignment:
Q  3 tatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgtta 102  Q
    |||||||||||||||| ||||||| || ||  |||||||||| |||| ||| |||||||||||||||||||  ||||||||||||| |||||||||||||    
T  2406027 tatgacatggttagtgccgctgtt-ccaacgttgatgcgcagttaggccaggaggaggtcatgagccctcagtagtggtttcaggccatgacccatgtta 2405929  T
Q  103 gggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgtt 202  Q
     ||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||    
T  2405928 cggagcagatcgcgccgatcttgaccaggaggcgaggctagaggccgaggaggaggcaccagcaacatcagcaggaccaggaccagtagtattttatgtt 2405829  T
Q  203 taggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||| ||||| | || |||||||||||||||||    
T  2405828 taggatagatttttaggatttggtgtatattttcat 2405793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 2407336 - 2407533
Alignment:
Q  35 tgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtagg 134  Q
    |||||||||| |||| ||| ||||||||||||||||||| | |||||||||| | |||||||||||||| || ||||||||| ||||||||||||| |||    
T  2407336 tgatgcgcagttaggccaggaggaggtcatgagccctcaccggtggtttcagaccatgacccatgttagagagcagatcgcgtcgatcttgaccaggagg 2407435  T
Q  135 cgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattttatgtttaggatatattttcatgacttggtgtatattt 234  Q
    |||||||| || ||||||||||||||| |||||||||||      |||||  ||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  2407436 cgaggccagagtccgaggaggaggcactagcagcatcag------caggaccagtagtattttatgtttaggatagatttttaggacttggtgtatattt 2407529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 26172995 - 26173187
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||||| || |||||||||| ||||||| ||||| || ||| || |||||||||||||||| ||||||||| |||| |||| |||| |    
T  26172995 cctatgacatggttagtgccgttgttgcctacgctgatgcacagattggccaggagaaggtcatgagccctcagcagtggttttaggccatgagccatct 26173094  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtat 194  Q
    || ||| ||||||||||||||||||| ||  ||||||||| | ||||||||||| ||||||||||||||||| ||||| |||||  ||||||||    
T  26173095 ta-ggagcagatcgcgccgatcttgatcatgaggcgaggctagaggccgaggagaaggcaccagcagcatcaataggaccaggaccagtagtat 26173187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22304308 - 22304482
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  22304308 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 22304407  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  22304408 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 22304482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 6204227 - 6204395
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  6204227 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 6204326  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  6204327 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 6204395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 11691194 - 11691362
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  11691194 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 11691293  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  11691294 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 11691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30826597 - 30826429
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  30826597 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 30826498  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  30826497 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 30826429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18001784 - 18001601
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||||  | || |||||||||| ||||||| ||||| || ||| | ||||||||||||||||| || ||||||||||| |||| ||||||    
T  18001784 cctatgacatggttaacggcgatgttgcctacgctgatgcacagatgggccaggaagaggtcatgagccctcatcaatggtttcaggccatgagccatgt 18001685  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    ||| || ||||||||||| || ||| |||| ||||||||  | |||||||||||||||||||| || |||||| |||| |||||    
T  18001684 tagagagcagatcgcgccaatattggccaggaggcgaggttagaggccgaggaggaggcaccaacaacatcagcaggaccagga 18001601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 27638826 - 27639000
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||| |||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  27638826 cctatgacatggtcagtggcgttgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 27638925  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||| |||||    
T  27638926 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcaccatcagca 27639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 31771145 - 31771308
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    |||||||||||||| ||| || |||||||||| ||||||||||| |||| ||| ||     ||||| |||||| |||||||||||||| |||| |||| |    
T  31771145 cctatgacatggtttgtggcgttgttgcctacgctgatgcgcagttaggccaggag-----catgacccctcagcagtggtttcaggccatgagccatat 31771239  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagca 169  Q
    |||||| |||||| ||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||    
T  31771240 tagggagcagatcacgccgattttgaccaggaggcgaggccagaggccgaggaggaggcaacatcagca 31771308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3384506 - 3384667
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagccctcaacagtggtttcaggcgatgacccatgt 100  Q
    ||||||||||||||||||| | |||||||| | ||||||| || ||||||||| |||||||||||||||||||  ||||||||||||| |||| ||||||    
T  3384506 cctatgacatggttagtgttgttgttgcct-cgctgatgcacaaataggtcaggaggaggtcatgagccctcagtagtggtttcaggccatgagccatgt 3384604  T
Q  101 tagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||||| || ||||| |||||||||||    ||||||||||| ||||| |||| |||| ||||    
T  3384605 tagggagcaaatcgccccgatcttgacttagaggcgaggccagaggcctaggatgaggtacca 3384667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 3502052 - 3502237
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtgg--------tttcag 86  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||  || ||||||||||||||      ||||| ||||||        ||||||    
T  3502052 cctatgacatggttagtggcgctgttgcctacactgatgcgcagttaggctaggaggaggtcatgagcatgacccctcagcagtggtttcgtggtttcag 3502151  T
Q  87 gcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatca 172  Q
    || |||| |||| ||||||| |||||| |||| ||||||||||| ||||||||||| ||||||||||||| |||||| || |||||    
T  3502152 gccatgagccatcttagggagcagatcacgcctatcttgaccaggaggcgaggccagaggccgaggaggaagcaccaacaacatca 3502237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 32641741 - 32641674
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccag 164  Q
    |||||||| | ||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||||    
T  32641741 atgttaggcagcagatcgcgccgatcattaccaggaggcgaggccagagaccgaggaggaggcaccag 32641674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 32643068 - 32643155
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||||| | ||||||||||||||| | ||||  ||||||||| | |||| ||||||||||||||||||||| ||| |||| |||||    
T  32643068 atgttaggcagcagatcgcgccgatcattaccatgaggcgaggctagaggctgaggaggaggcaccagcagcaccagcaggaccagga 32643155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 24085704 - 24085617
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||||| | ||||| ||||||||| | ||  | ||||||||||| |||||||||||||| |||||||| |||||| |||| |||||    
T  24085704 atgttaggcagcagattgcgccgatcattacttggaggcgaggccagaggccgaggaggagccaccagcaacatcagcaggaccagga 24085617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 7416959 - 7417100
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattt 196  Q
    |||||||| | || |||||||||||| | | ||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  7416959 atgttaggcagcaaatcgcgccgatcattatcaggaggcgaggccagaggccgaggaggaggcaccaacaacatcagtaggaccaggagtagtagtattt 7417058  T
Q  197 tatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7417059 tatgtttaggatatattttcatgacttggtgtatattttcat 7417100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 6638011 - 6637866
Alignment:
Q  55 aggaggtcatgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggag 154  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||    
T  6638011 aggaggtcatgagccctcaacagtggtttcaggccatgagccatgttagggagcagatcgcgccgatattgaccaggaggggagaccagaggccgaggag 6637912  T
Q  155 gaggcaccagcagcatcagtaggatcagg---agtagtagtatttt 197  Q
    ||||||||||||||||||| |||| ||||   ||||||||||||||    
T  6637911 gaggcaccagcagcatcagcaggaccaggaccagtagtagtatttt 6637866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30493940 - 30493772
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||      ||||| ||||||| | |||| |||||    
T  30493940 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 30493841  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  30493840 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 30493772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 39950566 - 39950744
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||| ||||||||||| ||||  || ||||||||||||||      ||||| ||||| |||||||| ||||     
T  39950566 cctatgacatggttagtggcgttgttgcctacgctgatgcgcagttaggctaggaggaggtcatgagcatgacccctcagcagtgatttcaggccatgag 39950665  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcag 173  Q
    |||| | ||||| |||||||||||||| |||||||| ||||||  ||| |||||||||||||||||||||||| |||||    
T  39950666 ccatatgagggagcagatcgcgccgattttgaccaggaggcgaacccagaggccgaggaggaggcaccagcaggatcag 39950744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 15834334 - 15834502
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| |||| |||| |||| || ||    
T  15834334 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtcgtttgaggccataac 15834433  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  15834434 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 15834502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36653475 - 36653303
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggagg------tcatgagccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||  |||||       |||||| |||||| |||||||||||||| ||||     
T  36653475 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaagaggagaacatgatcatgacccctcagcagtggtttcaggccatgag 36653376  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcag 167  Q
    |||| || |||| |||||| ||| |||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  36653375 ccatctttgggagcagatctcgctgatcttgaccaggaggcgaggctagaggccgaggaggaggcaccagcag 36653303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 43981599 - 43981767
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| ||||||| | |||| |||||    
T  43981599 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 43981698  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||||||||||||| |||||    
T  43981699 ccatatgagggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggagacacca 43981767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 28471606 - 28471803
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| |||||||||||||  |||||||||| |||| ||| ||||||||||||||      ||||| ||||||||| |||| |||||    
T  28471606 cctatgacatggttagtggcgctgttgcctacgttgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtttgaggccatgac 28471705  T
Q  95 ccatgttagggatcagatcgcgccgatcttgacca--gtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagta 190  Q
    |||| | ||||| |||||||||||||| ||||| |  | ||||||| ||| |||||||||||||||||||| |||||  | ||||| ||| |||||||    
T  28471706 ccatatgagggagcagatcgcgccgattttgacaaagggaggcgagcccagaggccgaggaggaggcaccatcagcaggattaggaccagtagtagta 28471803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5355049 - 5355217
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgag------ccctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| |||||||||||||      |||||| ||||||| | |||| |||||    
T  5355049 cctatgacatggttagtggcgctgttgcctacgctgatgcgcagttaggccaggaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 5355148  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| | | |||||||||| |||||||||    
T  5355149 ccatataagggagcagatcgcgccgattttgaccaggaggagagcctagaggccgaggatgaggcacca 5355217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 25514931 - 25514799
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagtagtattt 196  Q
    |||||| ||| |||||||||||||| ||| |||| ||||||||||| ||||||||||||         ||||||||| |||| |||||||||||||||||    
T  25514931 atgttatggagcagatcgcgccgatattggccaggaggcgaggccagaggccgaggagg---------cagcatcagcaggaccaggagtagtagtattt 25514841  T
Q  197 tatgtttaggatatattttcatgacttggtgtatattttcat 238  Q
    ||||||||||||||||||| | |||||| |||||||||||||    
T  25514840 tatgtttaggatatatttttaggacttgatgtatattttcat 25514799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 43536683 - 43536515
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    |||||||||||||||||| || |||||||||| ||||||||||| |||| ||  ||||||||||||||      ||||| ||||||| | |||| |||||    
T  43536683 cctatgacatggttagtggcgttgttgcctacgctgatgcgcagttaggccatgaggaggtcatgagcatgacccctcagcagtggtatgaggccatgac 43536584  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    |||| | ||||| |||||||||||||| |||||||| ||| ||| ||| |||| |||||||||||||||    
T  43536583 ccatatgagggagcagatcgcgccgattttgaccaggaggagagtccagaggctgaggaggaggcacca 43536515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29398584 - 29398389
Alignment:
Q  1 cctatgacatggttagtgtcgctgttgcctacactgatgcgcagataggtcagaaggaggtcatgagc------cctcaacagtggtttcaggcgatgac 94  Q
    ||||||||||||||   | ||||||||||||| ||||||||||| ||||  || ||||||||||||||      |||||||||||||||||||| ||||     
T  29398584 cctatgacatggtttacggcgctgttgcctacgctgatgcgcagttaggctaggaggaggtcatgagcatgacccctcaacagtggtttcaggccatgag 29398485  T
Q  95 ccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcaggagtagta 190  Q
    |||| | ||||| || |||  |||||| |||||||| ||| ||||||| |||||||||||||||||||| |||||  |  |||||||| |||||||    
T  29398484 ccatatgagggagcatatcatgccgattttgaccaggaggtgaggccagaggccgaggaggaggcaccatcagcaggaccaggatcagtagtagta 29398389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 40538702 - 40538789
Alignment:
Q  97 atgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcagtaggatcagga 184  Q
    |||||||| | |||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||    
T  40538702 atgttaggcagcagatcgcaccgatcattaccagtaggcgaggccagaggccgaggaggaggcaccagcagcataagcaggaccagga 40538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 17423599 - 17423706
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcac 161  Q
    ||||| |||||| ||||||||| |||| ||||||||| | ||||| ||||||||||||||  ||||||| ||| ||| ||| ||||||||| ||||||||    
T  17423599 catgacccctcagcagtggtttgaggccatgacccatatgagggagcagatcgcgccgattctgaccaggaggagagcccagaggccgaggcggaggcac 17423698  T
Q  162 cagcagca 169  Q
    || |||||    
T  17423699 catcagca 17423706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 10825830 - 10825732
Alignment:
Q  62 catgagccctcaacagtggtttcaggcgatgacccatgttagggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggca 160  Q
    ||||| |||||| |||||||||||||| |||| |||| | ||||| |||||||||  ||| |||||||| ||||||| ||| |||||||||||||||||    
T  10825830 catgacccctcagcagtggtttcaggccatgagccatatgagggagcagatcgcgttgattttgaccaggaggcgagaccagaggccgaggaggaggca 10825732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 3938411 - 3938350
Alignment:
Q  102 agggatcagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcacca 163  Q
    ||||| |||||||||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  3938411 agggagcagatcgcgccgattttgaccaggaggagagcccagaggccgaggaggaggcacca 3938350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 12538 - 12603
Alignment:
Q  108 cagatcgcgccgatcttgaccagtaggcgaggccaaaggccgaggaggaggcaccagcagcatcag 173  Q
    ||||||||||||||| | ||||  |||||||| || ||||||||||||||||||||||||||||||    
T  12538 cagatcgcgccgatcattaccaagaggcgagggcagaggccgaggaggaggcaccagcagcatcag 12603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University