View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_16 (Length: 243)
Name: NF3080_low_16
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35321984 - 35321760
Alignment:
| Q |
1 |
tagtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttgcttc |
100 |
Q |
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||||||| |||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35321984 |
tagtattgttgttgctcttacattttttataagttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttccttc |
35321885 |
T |
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| Q |
101 |
aagtaatgaatggatcaaagtaattttatattggagtcaaattttgcannnnnnnncattgtaattgtaaggaaagtgtgtagagctaggtagatggttc |
200 |
Q |
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| T |
35321884 |
aggtaatgaatggaccaaagtaattttatattggagtcaaatcttgcattttttt---tttccattgtaaggaaagtgtgtagagctaggtagatggttc |
35321788 |
T |
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| Q |
201 |
atgttgtctttatatgttggaacttcct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35321787 |
atgttgtctttatatgttggaacttcct |
35321760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35306983 - 35306767
Alignment:
| Q |
1 |
tagtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttgcttc |
100 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
35306983 |
tagtattgttgttactttttcatttttgataatttgaatgtttgtagttccacaaatacatgaaagttgttatatgtatgttatttgt----tttgcttt |
35306888 |
T |
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| Q |
101 |
aagtaatgaatggatcaaagtaattttatattggagtcaaattttgcannnnnnnncattgtaattgtaaggaaagtgtgtagagctaggtagatggttc |
200 |
Q |
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|||||||||| |||||||||||||||||| ||||| |||||| ||||| || | |||||||||||||||||||| ||||||||||||| |
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| T |
35306887 |
aagtaatgaacggatcaaagtaattttatgttggattcaaatcttgcattttttt---ttttcattgtaaggaaagtgtgtag----aggtagatggttc |
35306795 |
T |
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| Q |
201 |
atgttgtctttatatgttggaacttcct |
228 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
35306794 |
atgttgtctttatatattggaacttcct |
35306767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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