View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_18 (Length: 237)
Name: NF3080_low_18
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 6137889 - 6138095
Alignment:
| Q |
13 |
tatattattctccaacttggaatcatctactcacgtagctagggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaatt |
112 |
Q |
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| T |
6137889 |
tatattattctccaacttggaatcatctactcacgtag----ggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaatt |
6137984 |
T |
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| Q |
113 |
ataataatataagatatggttactaattgattgtatataaataaaatcagca--gtgtgtgtgataagaaaacaaataataaagagtgagtggagcatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6137985 |
ataataatataagatatggttactaattgattgtatataaataaaatcagcaatgtgtgtgtgataagaaaacaaataataaagagtgagtggagcatta |
6138084 |
T |
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| Q |
211 |
taggaaaataa |
221 |
Q |
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| T |
6138085 |
taggaaaataa |
6138095 |
T |
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