View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3080_low_19 (Length: 233)

Name: NF3080_low_19
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3080_low_19
NF3080_low_19
[»] chr2 (4 HSPs)
chr2 (15-233)||(43713376-43713594)
chr2 (15-233)||(43702552-43702770)
chr2 (19-233)||(43686056-43686270)
chr2 (40-233)||(43727303-43727496)
[»] scaffold0236 (1 HSPs)
scaffold0236 (21-233)||(24426-24638)
[»] chr1 (1 HSPs)
chr1 (21-233)||(25273084-25273296)
[»] chr4 (1 HSPs)
chr4 (70-233)||(2689707-2689870)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 43713376 - 43713594
Alignment:
Q  15 ttattctctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43713376 ttattctctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaata 43713475  T
Q  115 accatagggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatct 214  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43713476 actatagggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccggaatagtatatatccaagatcatct 43713575  T
Q  215 tggttggaaagttggtttt 233  Q
    |||||||| | ||||||||    
T  43713576 tggttggagaattggtttt 43713594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 43702552 - 43702770
Alignment:
Q  15 ttattctctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaata 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  43702552 ttattctctgccctaattctgatagcaattggaaatggtggtatttcatgttctttagcatttggtgcagaccaagttaatagaaaagataaccctaata 43702651  T
Q  115 accatagggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatct 214  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  43702652 accgcagggttttggaaatattcttcagttggtattatgctttcacaactatagctgtcataatagctctcactggaatagtatatatccaagatcatct 43702751  T
Q  215 tggttggaaagttggtttt 233  Q
    |||||||||||||||||||    
T  43702752 tggttggaaagttggtttt 43702770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 43686056 - 43686270
Alignment:
Q  19 tctctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaataacca 118  Q
    ||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |    
T  43686056 tctctgcgttgattctgataggaattggaaatggtggtatttcatgttctttagcatttggtgcagaccaagttaaaagaaaagaaaattccaataacaa 43686155  T
Q  119 tagggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatcttggt 218  Q
    ||| | ||||||||||||||||| |||||||||||||| || ||||||||||||||||  ||||||    || |||||||||||||||||||||||||||    
T  43686156 tagagctttggaaatattcttcacttggtattatgcttccacaactatagctgtcatagcagctctatttggaatagtatatatccaagatcatcttggt 43686255  T
Q  219 tggaaagttggtttt 233  Q
    |||| | ||||||||    
T  43686256 tggagaattggtttt 43686270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 43727303 - 43727496
Alignment:
Q  40 caattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaataaccatagggttttggaaatattctt 139  Q
    |||| |||||||||||| || |||||||  |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  43727303 caataggaaatggtggtctttcatgttccatagcatttggtgcagaccaagtgaatagaaaagataatcccaataatcatagggttttggaaatattctt 43727402  T
Q  140 cagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatcttggttggaaagttggtttt 233  Q
    |||||||||||||||||||| ||||||  || ||||| |||||||||| |  || |||||||||||||| ||||||||||||||| ||||||||    
T  43727403 cagttggtattatgctttcacaactatttctatcatactagctctcactgtaattgtatatatccaagagcatcttggttggaaaattggtttt 43727496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 24638 - 24426
Alignment:
Q  21 tctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaataaccata 120  Q
    |||||||| ||||| ||  |||||| || ||||||| || |||||||  | |||||||||||||||||||| |||| ||||||||| || |||||| |||    
T  24638 tctgcctttattctcatttcaattgcaagtggtggtgtttcatgttccatggcatttggtgcagaccaagtaaatataaaagataaccctaataacaata 24539  T
Q  121 gggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatcttggttg 220  Q
    |||| |||||||| || ||||| ||||||||||||||   || |||  ||| ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  24538 gggtcttggaaatgtttttcagctggtattatgcttttgcaagtatctctgccataatagctctcactgtaatagtatatatccaagatcatcttggttg 24439  T
Q  221 gaaagttggtttt 233  Q
    |||| ||||||||    
T  24438 gaaaattggtttt 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 25273084 - 25273296
Alignment:
Q  21 tctgccttaattctgatagcaattggaaatggtggtattacatgttctttagcatttggtgcagaccaagttaatagaaaagataatcccaataaccata 120  Q
    |||||||| ||||| ||  |||||| || ||||||| || |||||||  | |||||||||||||||||||| |||| ||||||||| || |||||| |||    
T  25273084 tctgcctttattctcatttcaattgcaagtggtggtgtttcatgttccatggcatttggtgcagaccaagtaaatataaaagataaccctaataacaata 25273183  T
Q  121 gggttttggaaatattcttcagttggtattatgctttcataactatagctgtcataatagctctcaccgggatagtatatatccaagatcatcttggttg 220  Q
    |||| |||||||| || ||||| ||||||||||||||   || |||  ||| ||||||||||||||| |  |||||||||||||||||||||||||||||    
T  25273184 gggtcttggaaatgtttttcagctggtattatgcttttgcaagtatctctgccataatagctctcactgtaatagtatatatccaagatcatcttggttg 25273283  T
Q  221 gaaagttggtttt 233  Q
    |||| ||||||||    
T  25273284 gaaaattggtttt 25273296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 2689707 - 2689870
Alignment:
Q  70 tagcatttggtgcagaccaagttaatagaaaagataatcccaataaccatagggttttggaaatattcttcagttggtattatgctttcataactatagc 169  Q
    |||| ||||| || ||||| || ||||||||||| |||||  ||||||| ||||  ||||||||||||||||||||||| ||||||| |    ||||  |    
T  2689707 tagcgtttggcgcggaccaggtgaatagaaaagacaatcctgataaccaaagggccttggaaatattcttcagttggtactatgcttcctcggctatttc 2689806  T
Q  170 tgtcataatagctctcaccgggatagtatatatccaagatcatcttggttggaaagttggtttt 233  Q
    ||||||||| ||  |||| || |||||||||||||||||||||||||| |||||| ||||||||    
T  2689807 tgtcataattgcattcacaggaatagtatatatccaagatcatcttggatggaaacttggtttt 2689870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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