View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3080_low_2 (Length: 632)

Name: NF3080_low_2
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3080_low_2
NF3080_low_2
[»] scaffold0050 (1 HSPs)
scaffold0050 (13-617)||(2160-2766)


Alignment Details
Target: scaffold0050 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Complemental strand, 2766 - 2160
Alignment:
Q  13 agaatgcatcctgaaaacgatggagttgatggttcaaaatcgaccgataaaatagaagccaaagagaacacaagttcaaggcagaaaattgttattaaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2766 agaatgcatcctgaaaacgatggagttgatggttcaaaatcgaccgataaaatagaagccaaagagaacacaagttcaaggcagaagattgttattaaag 2667  T
Q  113 aagaaaaggtttctgttgcatctaggtacatgaagggtgttctaaatccaaactcaaaagtgaatgcgtcggatactaatataggaagcaaaggaaatga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2666 aagaaaaggtttctgttgcatctaggtacatgaagggtgttctaaatccaaactcaaaagtgaatgcgtcggatactaatataggaagcaaaggaaatga 2567  T
Q  213 tttcgagaatggtgtagatggtaggaaagtgggatctactaaaggaaagcagctagagattaaaggtcaggtatgattcttgatccagaatttcaatttt 312  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2566 tttcgagaatggtgtagatggtaggaaaatgggatctaccaaaggaaagcagctagagattaaaggtcaggtatgattcttgatccggaatttcaatttt 2467  T
Q  313 cgaaggctcaagtatgtgtatagttgaaaaactaaatctccctctcttgtggctatgaaatactgtttgattttaactctggtca---ccttagggaagg 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   || ||||||||     
T  2466 cgaaggctcaagtatgtgtatagttgaaaaactaaatctccctctcttgtggctatgaaatagtgtttgattttaactctggtcacttccgtagggaaga 2367  T
Q  410 ggccctgataattcggagtttggccagaagaaattgaagtctagctaagagttattcgagtcaggattaaaactcgggttctcccaaacgaatcgtcctt 509  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  2366 ggccctgataatttggagttcggccagaagaaattgaagtctagctaagatttatttgagtcaggattaaaactcgggttctcccgaacgaatcgtcctt 2267  T
Q  510 aaagtggatttgaaatagttnnnnnnnnnnnnnttattattcgctcaagtatgactagtcccttaaagtcaaaattgtaaagaatttcaattaacatata 609  Q
    ||||||||| ||||||||||             ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2266 aaagtggatatgaaatagtt-agaaaatgaaaattattattctctcaagtatgactagtcccttaaaatcaaaattgtaaagaatttcaattaacatata 2168  T
Q  610 aactcttt 617  Q
    ||||||||    
T  2167 aactcttt 2160  T

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