View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_21 (Length: 208)
Name: NF3080_low_21
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 2044454 - 2044600
Alignment:
| Q |
47 |
gttgaagcctatacaaaaccttcattatcaagatatattcagctatttgaataataatggctgcaattgcaatgaagattagctttattttgttggtttt |
146 |
Q |
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| T |
2044454 |
gttgaagcctatacaaaaccttcattatcaagatatattcagctatttgaataataatggctgcaattgcaatgaagattagctttattttgttggtttt |
2044553 |
T |
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| Q |
147 |
ggccataactattccatgccttgagggtcgtattggtgagtttgatg |
193 |
Q |
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| T |
2044554 |
ggccataactattccatgccttgagggtcgtattggtgagtttgatg |
2044600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 2287331 - 2287185
Alignment:
| Q |
47 |
gttgaagcctatacaaaaccttcattatcaagatatattcagctatttgaataataatggctgcaattgcaatgaagattagctttattttgttggtttt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287331 |
gttgaagcctatacaaaaccttcattatcaagatatattcagctatttgaataataatggctgcaattgcaatgaagattagctttattttgttggtttt |
2287232 |
T |
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| Q |
147 |
ggccataactattccatgccttgagggtcgtattggtgagtttgatg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287231 |
ggccataactattccatgccttgagggtcgtattggtgagtttgatg |
2287185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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