View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_3 (Length: 589)
Name: NF3080_low_3
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 43940870 - 43940302
Alignment:
| Q |
18 |
cacattgggacaaccatgaacatgaatatacagtttttcacatccaagccacgcaatatgctgcgggttcttgacgtacccgatgtttgacttgattcat |
117 |
Q |
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| T |
43940870 |
cacattgggacaaccatgaacatgaatatacagtttttcacatccaagccacgcaatatgctgcgggttcttgacgtacccgatgtttgacttgattcat |
43940771 |
T |
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| Q |
118 |
gcatgtttaaggaacaa-gaatcttggtaaaccataaaaatatgaagatgcagcttctcaaatcctaaaaagataac-aaccaatttttgaaaggctaac |
215 |
Q |
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| T |
43940770 |
gcatgtttaaggaacaaagaatcttggtaaaccataaaaatatgaagatgcagcttctcaaatcctaaaaagataaccaaccaatttttgaaaggctaac |
43940671 |
T |
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| Q |
216 |
tttcctctctactagcaaaattttcaaggattatataactggtaccagaaattataatcataaagccagagttgcatcaggaagatattaccatgcaaaa |
315 |
Q |
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| T |
43940670 |
tttcctctctactagcaaaattttcaaggattatataactggtaccagaaattataatcataaagccagagttgcatcaggaagatattaccatgcaaaa |
43940571 |
T |
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| Q |
316 |
aagataaaaccaaaacgcacaacttgttcatgtgaggaaatctttcccccattcaaattcaagtacggcagaaa-cccctttctcctccaaaacaaacct |
414 |
Q |
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| T |
43940570 |
aagataaaaccaaaacgcacaacttgttcatgtgaggaaatctttcccccattcaaattcaagtacggcagaaaccccctttctcctccaaaacaaacct |
43940471 |
T |
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| Q |
415 |
cccaaaaatagtaataacacaaaagggaacaagataaaagggtgtctcttatacatttacctgcaaaccacacaaaatagttcaactgatttgctaaaat |
514 |
Q |
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| T |
43940470 |
cccaaaaatagtaataacacaaaagggaacaagataaaagggtgtctcttatacatttacctgcaaaccacacaaaatagttcaactgatttgctaaaat |
43940371 |
T |
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| Q |
515 |
tagagaagttaagcacttaacctcnnnnnnnnnnnnncaaccttatccccctatccaaattcatctcac |
583 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
43940370 |
tagaaaagttaagcacttaacctcaaaaaaacaaaaacaaccttatccccctatccaaattcatatcac |
43940302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 37477258 - 37477312
Alignment:
| Q |
232 |
aaaattttcaaggattatataactggtaccagaaattataatcataaagccagag |
286 |
Q |
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|||||||||||| || ||| ||| |||||||||||| ||||||||||||||||| |
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| T |
37477258 |
aaaattttcaagaatcatacaacaagtaccagaaattctaatcataaagccagag |
37477312 |
T |
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