View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_4 (Length: 571)
Name: NF3080_low_4
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 22 - 549
Target Start/End: Complemental strand, 37931687 - 37931159
Alignment:
| Q |
22 |
gatggttcttctttttagtatctgtcagcatcagcagtagggttaaactcaaaagtgtaatattctccaatctcgtaaccccctgcaatttttgacggct |
121 |
Q |
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| T |
37931687 |
gatggttcttctttttcgtatctgtcagcatcagcagtagggttaaactcaaaagtgtaatattctccaatctcgtaaccccctgcattttttgacggct |
37931588 |
T |
|
| Q |
122 |
ccataccacgcgacagtattgctactttatctttatctttaaagttacctattgcttcccagtcccagaatccatcaaaatgcgaacaactgtatgattg |
221 |
Q |
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| T |
37931587 |
ccataccacgcgacagtattgctactttatctttatctttaaagttacctattgcttcccagtcccagaatccatcaaaatgcgaacaactgtatgattg |
37931488 |
T |
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| Q |
222 |
aaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaaccatggagaacaactaatccagaagatgttgatagaatgttactaggaaga |
321 |
Q |
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| T |
37931487 |
aaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaaccatagagaacaactaatccagaagatgttgatagaatgttactaggaaga |
37931388 |
T |
|
| Q |
322 |
cttacactcctaagctcgacacaaccatttaaacataaacaactaagattgcttaggaagcccgaggagtaaacttgcagcaactttacaaaataactaa |
421 |
Q |
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| T |
37931387 |
cttacactcctaagctcgacacaaccatttaaacataaacaactaagattgcttaggaagcccgaggagtaaacttgcagcaactttacaaaataactaa |
37931288 |
T |
|
| Q |
422 |
gaattattccttcaatatttggggac-aagccttttcaaatttggtaaagcctagaacaagaagtaaagatgaacaaaaattcaatgaacttgatattat |
520 |
Q |
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| T |
37931287 |
gaattatttcttcaatatttggggacaaagccttttcaaatttggtaaagcctagaacaagaagtaaagatgaacaaaaattcaatgaacttgatattat |
37931188 |
T |
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| Q |
521 |
ttatgaggtgaatacgtactattccattt |
549 |
Q |
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| T |
37931187 |
ttatgaggtgaatacgtactattccattt |
37931159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 37952216 - 37952294
Alignment:
| Q |
215 |
atgattgaaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaaccatggagaacaactaatccaga |
293 |
Q |
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||||||||||||| ||||||||| || ||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
37952216 |
atgattgaaccacgccagttctactgctgattaaaagcgtttcaagattgcgacaaccatggagtgcaactaatccaga |
37952294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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