View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_5 (Length: 456)
Name: NF3080_low_5
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 208 - 456
Target Start/End: Original strand, 26613365 - 26613618
Alignment:
| Q |
208 |
tgataatgccaagagta---gtacacttcttgatgcatgcataaactagctatagcaagaagaatatcaagaact--atagtagcaatggcttatccaca |
302 |
Q |
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| T |
26613365 |
tgataatgccaagagtactagtacacttcttgatgcatgcataaactagctatagcaagaagaatatcaagaactctatagtagcaatggcttatccaca |
26613464 |
T |
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| Q |
303 |
ttatcgatcacaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaa |
402 |
Q |
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| T |
26613465 |
ttatcgatcacaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaa |
26613564 |
T |
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| Q |
403 |
tttggtgacatacttgaagctgtcattatcactgataagaacacaggaaaatct |
456 |
Q |
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| T |
26613565 |
tttggtgacatacttgaagctgtcattatcactgataagaacacaggaaaatct |
26613618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 26613166 - 26613272
Alignment:
| Q |
9 |
acatcatcatattcataaaccatacccacctctctcttttctcttaaaatttagtgattctctcctattgggaaaagaagaaagaggttttgttgaatgg |
108 |
Q |
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| T |
26613166 |
acatcatcatattcataaaccatacccacctctctcttttctcttaaaatttagtgattctctcctattgggaaaagaagaaagaggttttgttgaatgg |
26613265 |
T |
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| Q |
109 |
tggggtt |
115 |
Q |
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| T |
26613266 |
tggggtt |
26613272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 441
Target Start/End: Original strand, 9036484 - 9036603
Alignment:
| Q |
322 |
gacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaatttggtgacatacttgaag |
421 |
Q |
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| T |
9036484 |
gacacaacatttaccaaattatttgttggagggttagcttgggaaactcaaagggaaacaatgagaatgtattttgaacaatttggagagatcttagaag |
9036583 |
T |
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| Q |
422 |
ctgtcattatcactgataag |
441 |
Q |
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| T |
9036584 |
ctgttgttatcactgataag |
9036603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 12141532 - 12141590
Alignment:
| Q |
312 |
acaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactc |
370 |
Q |
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| T |
12141532 |
acaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactc |
12141590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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