View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_6 (Length: 428)
Name: NF3080_low_6
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 49269444 - 49269145
Alignment:
| Q |
18 |
aaactgatctttccattaaaattcgatttaggagtagttcatgcaaccagtcaaaagtgttgaagctttcaaaagagggatctgggttctggtttttgag |
117 |
Q |
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| T |
49269444 |
aaactgatctttccattaaaattcgatttaggagtagttcatgcaaccagtcaaaagtgttgaagctttcaaaagagggatctgggttctggtttttgag |
49269345 |
T |
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| Q |
118 |
cactggtggtgtagctggggatgttgttagtaagttcaa-attgagaagcttgaaggagacactgggattccaatctatatctttaagttctgtccttct |
216 |
Q |
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| T |
49269344 |
cactggtggtgtagctggggatgttgttagtaagttcaagattgagaagcttgaaggagacactgggattccaatctatatctttaagttctgtccttct |
49269245 |
T |
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| Q |
217 |
gttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaaccttattatg |
316 |
Q |
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| T |
49269244 |
gttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaaccttattatg |
49269145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 49271841 - 49271614
Alignment:
| Q |
69 |
caaaagtgttgaagctttcaaaagagggatctgggttctggtttttgagcactggtggtgtagctggggatgttgttagtaagttcaa-attgagaagct |
167 |
Q |
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| T |
49271841 |
caaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagcactggtggtgcagctggggatcttgttagcaagttcaagattgagaggct |
49271742 |
T |
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| Q |
168 |
tgaaggagacactgggattccaatctatatctttaagttctgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatgga |
267 |
Q |
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| T |
49271741 |
tgcaggtgaacatgcttatgagatatatagctttaagttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatgga |
49271642 |
T |
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| Q |
268 |
actaaagttatggctgttggtgatggta |
295 |
Q |
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| T |
49271641 |
actaaagttatggctgttggtgatggta |
49271614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 49277619 - 49277531
Alignment:
| Q |
207 |
ctgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggta |
295 |
Q |
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| T |
49277619 |
ctgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggta |
49277531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 49269054 - 49268984
Alignment:
| Q |
338 |
tataaataagtcatcgaagtggacaaacagagtaccctgtctctctctgatttaagatttgctactttcctttgagaat |
416 |
Q |
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|||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49269054 |
tataaataagccaccgaagtggacaaacagagtaccct--------ctgatttaagatttgctactttcctttgagaat |
49268984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 41309276 - 41309304
Alignment:
| Q |
313 |
tatggatgttcaaataacacaactctata |
341 |
Q |
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| T |
41309276 |
tatggatgttcaaataacacaactctata |
41309304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 1156879 - 1156912
Alignment:
| Q |
313 |
tatggatgttcaaataacacaactctataaataa |
346 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
1156879 |
tatggatgttcaaataacacaactctaaaaataa |
1156912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 41195743 - 41195775
Alignment:
| Q |
313 |
tatggatgttcaaataacacaactctataaata |
345 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
41195743 |
tatgaatgttcaaataacacaactctataaata |
41195775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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