View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3080_low_8 (Length: 374)
Name: NF3080_low_8
Description: NF3080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3080_low_8 |
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| [»] scaffold0591 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 58 - 350
Target Start/End: Complemental strand, 28646682 - 28646386
Alignment:
| Q |
58 |
aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaa-----annnnnnnnnagggatattt |
152 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
28646682 |
aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt |
28646583 |
T |
|
| Q |
153 |
ggctaaatgttagattgtagtgtttctaaannnnnnnnnnnnnnnnnnnnncaaccctgtcgttcttaagaatcattctcttccccattcaatcaaattg |
252 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||||| |||||||||||||||| |
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| T |
28646582 |
ggctaaatgttagattgtagtgtttctaaattttttgagagtttctttttccaaccctgtcgttctttagaaccactctcttctccattcaatcaaattg |
28646483 |
T |
|
| Q |
253 |
aatgnnnnnnncaccgtttactatatttacctatcaacataggatctggtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag |
350 |
Q |
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|||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28646482 |
aatgggaaaaataccgtttac-atatttacctatccacatatgatcttgtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag |
28646386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 58 - 350
Target Start/End: Complemental strand, 28651266 - 28650970
Alignment:
| Q |
58 |
aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaa-----annnnnnnnnagggatattt |
152 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
28651266 |
aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt |
28651167 |
T |
|
| Q |
153 |
ggctaaatgttagattgtagtgtttctaaannnnnnnnnnnnnnnnnnnnncaaccctgtcgttcttaagaatcattctcttccccattcaatcaaattg |
252 |
Q |
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| T |
28651166 |
ggctaaatgttagattgtagtgtttctaaattttttgagagtttctttttccaaccctgtcgttctttagaaccactctcttctccattcaatcaaattg |
28651067 |
T |
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| Q |
253 |
aatgnnnnnnncaccgtttactatatttacctatcaacataggatctggtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag |
350 |
Q |
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|||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28651066 |
aatgggaaaaataccgtttac-atatttacctatccacatatgatcttgtctagataaacaaatccatatatgaatgtggttttaaagaaatttgtag |
28650970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 28624896 - 28624782
Alignment:
| Q |
16 |
agatacaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaa-atggtcaggcttatc |
114 |
Q |
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||||||||| ||||||||||||||||||||||| ||| || |||||||||||| |||| | ||||||| ||||| ||||||| |||||||||| |||| |
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| T |
28624896 |
agatacaattgaataagccaatcatttatacaaaaaataa--aataaaagaataagcca--ccattgatagccctccatccaaatatggtcaggcatatc |
28624801 |
T |
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| Q |
115 |
aacaacatatttggctaaa |
133 |
Q |
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||||||||||||||||||| |
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| T |
28624800 |
aacaacatatttggctaaa |
28624782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 28642543 - 28642493
Alignment:
| Q |
16 |
agatacaatagaataagccaatcatttatacaacaaaaaagaaataaaaga |
66 |
Q |
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|||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
28642543 |
agatgcaatagaaaaagtcaatcatttatacaacaaaaaagaaataaaaga |
28642493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 28646908 - 28646869
Alignment:
| Q |
16 |
agatacaatagaataagccaatcatttatacaacaaaaaa |
55 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |
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| T |
28646908 |
agatgcaatagaaaaagccaatcatttatacaacaaaaaa |
28646869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 28651492 - 28651453
Alignment:
| Q |
16 |
agatacaatagaataagccaatcatttatacaacaaaaaa |
55 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |
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| T |
28651492 |
agatgcaatagaaaaagccaatcatttatacaacaaaaaa |
28651453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 204 - 363
Target Start/End: Original strand, 7413 - 7573
Alignment:
| Q |
204 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatgnnnnnnn-caccgtttactatatttacctatcaacataggatctggt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| | |
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| T |
7413 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatgggaagaaacaccgttaactatatttacctatccacatacgatctgtt |
7512 |
T |
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| Q |
303 |
ctagataaacaaatccatatatgaatgtggttttaaagaaatttgtaggggtgaaagtata |
363 |
Q |
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| T |
7513 |
ctagataaacaaatccatatatgaatgtggttttaaagaaatttgtaggggtgaaagtata |
7573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 7189 - 7306
Alignment:
| Q |
16 |
agatacaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatca |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7189 |
agatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatca |
7288 |
T |
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| Q |
116 |
acaacatatttggctaaa |
133 |
Q |
| |
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|||||||||||||||||| |
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| T |
7289 |
acaacatatttggctaaa |
7306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 7354 - 7391
Alignment:
| Q |
145 |
ggatatttggctaaatgttagattgtagtgtttctaaa |
182 |
Q |
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| T |
7354 |
ggatatttggctaaatgttagattgtagtgtttctaaa |
7391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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