View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3081_high_4 (Length: 486)

Name: NF3081_high_4
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3081_high_4
NF3081_high_4
[»] chr1 (16 HSPs)
chr1 (9-151)||(39855214-39855356)
chr1 (226-312)||(12792281-12792367)
chr1 (226-296)||(39855431-39855501)
chr1 (226-314)||(17684495-17684583)
chr1 (226-305)||(23344459-23344538)
chr1 (242-296)||(35574487-35574541)
chr1 (226-310)||(35587934-35588014)
chr1 (242-296)||(37780007-37780061)
chr1 (226-285)||(15356376-15356435)
chr1 (226-305)||(23341440-23341519)
chr1 (226-257)||(33286249-33286280)
chr1 (242-296)||(35585124-35585178)
chr1 (226-296)||(37504997-37505066)
chr1 (246-296)||(46191774-46191824)
chr1 (261-314)||(28865878-28865931)
chr1 (226-267)||(51936612-51936653)
[»] chr4 (25 HSPs)
chr4 (230-351)||(48093247-48093368)
chr4 (226-288)||(10466545-10466607)
chr4 (226-296)||(2332762-2332832)
chr4 (230-296)||(36774652-36774718)
chr4 (226-314)||(43890362-43890450)
chr4 (230-314)||(49792931-49793015)
chr4 (230-296)||(2567265-2567331)
chr4 (226-305)||(21168422-21168501)
chr4 (226-296)||(36390761-36390831)
chr4 (226-305)||(2772261-2772339)
chr4 (226-305)||(26592820-26592899)
chr4 (246-312)||(46513756-46513822)
chr4 (226-267)||(9981112-9981153)
chr4 (246-314)||(11284266-11284334)
chr4 (226-305)||(45936611-45936689)
chr4 (226-296)||(2774965-2775035)
chr4 (226-296)||(9617214-9617284)
chr4 (226-296)||(20902487-20902557)
chr4 (230-280)||(40729244-40729294)
chr4 (226-280)||(49790622-49790676)
chr4 (226-296)||(51029582-51029652)
chr4 (227-296)||(9618401-9618470)
chr4 (230-267)||(52073516-52073553)
chr4 (226-266)||(46518349-46518389)
chr4 (226-266)||(51025994-51026034)
[»] chr3 (24 HSPs)
chr3 (226-314)||(37268057-37268145)
chr3 (226-314)||(37718045-37718133)
chr3 (229-296)||(34470249-34470316)
chr3 (226-302)||(30191670-30191746)
chr3 (230-305)||(30194485-30194559)
chr3 (226-296)||(10036831-10036900)
chr3 (226-296)||(11377187-11377257)
chr3 (230-296)||(42321728-42321794)
chr3 (226-296)||(47760903-47760973)
chr3 (226-280)||(51017261-51017315)
chr3 (226-295)||(46412475-46412544)
chr3 (230-296)||(44926782-44926848)
chr3 (242-296)||(49272741-49272795)
chr3 (242-288)||(14633405-14633451)
chr3 (246-296)||(40465618-40465668)
chr3 (230-296)||(46415203-46415269)
chr3 (226-296)||(48098130-48098200)
chr3 (226-279)||(11379767-11379820)
chr3 (226-267)||(21196603-21196644)
chr3 (226-267)||(45266536-45266577)
chr3 (226-267)||(52560287-52560328)
chr3 (226-267)||(54921407-54921448)
chr3 (226-258)||(40469261-40469293)
chr3 (229-305)||(47759157-47759233)
[»] chr8 (8 HSPs)
chr8 (226-345)||(33074783-33074903)
chr8 (230-296)||(42167159-42167225)
chr8 (226-296)||(8036255-8036325)
chr8 (226-314)||(19243142-19243230)
chr8 (226-314)||(19316326-19316414)
chr8 (226-280)||(26488515-26488569)
chr8 (243-280)||(41363004-41363041)
chr8 (226-266)||(16583195-16583235)
[»] chr2 (13 HSPs)
chr2 (229-305)||(23719316-23719392)
chr2 (229-305)||(24106988-24107064)
chr2 (226-314)||(6978765-6978853)
chr2 (226-295)||(17537145-17537213)
chr2 (226-280)||(5422297-5422351)
chr2 (226-267)||(10602229-10602270)
chr2 (226-267)||(19507803-19507844)
chr2 (226-267)||(22712221-22712262)
chr2 (244-296)||(44074310-44074362)
chr2 (242-297)||(4425040-4425094)
chr2 (242-305)||(24108433-24108496)
chr2 (230-267)||(13329753-13329790)
chr2 (226-267)||(15630464-15630505)
[»] chr7 (11 HSPs)
chr7 (230-314)||(47943261-47943345)
chr7 (230-314)||(47948691-47948775)
chr7 (226-296)||(17185131-17185201)
chr7 (226-278)||(2204023-2204075)
chr7 (226-267)||(3615353-3615394)
chr7 (229-296)||(22292771-22292838)
chr7 (226-296)||(2206275-2206345)
chr7 (226-296)||(4997152-4997222)
chr7 (226-267)||(42013603-42013644)
chr7 (227-267)||(1805109-1805149)
chr7 (226-266)||(10552701-10552741)
[»] chr5 (15 HSPs)
chr5 (230-286)||(7483703-7483759)
chr5 (232-311)||(1690368-1690447)
chr5 (226-305)||(7486582-7486661)
chr5 (230-296)||(36351263-36351328)
chr5 (226-296)||(2897956-2898026)
chr5 (226-314)||(1696668-1696755)
chr5 (226-296)||(5124458-5124528)
chr5 (226-267)||(8214319-8214360)
chr5 (226-267)||(12936262-12936303)
chr5 (226-267)||(12950417-12950458)
chr5 (226-267)||(22965776-22965817)
chr5 (226-296)||(22964672-22964741)
chr5 (230-296)||(39939970-39940035)
chr5 (227-267)||(6791649-6791689)
chr5 (226-314)||(36348572-36348659)
[»] scaffold0589 (2 HSPs)
scaffold0589 (230-296)||(5547-5613)
scaffold0589 (227-296)||(1392-1461)
[»] chr6 (2 HSPs)
chr6 (242-296)||(12398746-12398800)
chr6 (226-267)||(9904654-9904695)
[»] scaffold0004 (2 HSPs)
scaffold0004 (226-296)||(127209-127279)
scaffold0004 (226-267)||(130566-130607)
[»] scaffold1903 (1 HSPs)
scaffold1903 (230-267)||(285-322)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 39855214 - 39855356
Alignment:
Q  9 gagaagaagcatgagagaaactcaaatattgattagcactacccatgattttagtgtaggatggtaaatcttggttgaatattggggaagtagatgaatt 108  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39855214 gagatgaagcatgagagaaactcgaatattgattagcactacccatgattttagtgtaggatggtaaatcttggttgaatattggggaagtagatgaatt 39855313  T
Q  109 agaagtatattnnnnnnnngatgaagaagaagcttacattcat 151  Q
    |||||||||||        ||||||||||||||||||||||||    
T  39855314 agaagtatattaaaaaaaagatgaagaagaagcttacattcat 39855356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 12792367 - 12792281
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagc 312  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||| ||||||||||||||| ||||||| || ||||| ||||||    
T  12792367 ttgcttttttgacaatgaatacttcctactgacacaagtaaatgacgtttttacctccagcggcagttaacaaccgttaggctaagc 12792281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 39855431 - 39855501
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  39855431 ttgcttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttacccccagcggcagttaac 39855501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 17684495 - 17684583
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||| ||||||| || ||||| ||| ||||    
T  17684495 ttgcttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttaccctcagcggcagttaacaaccgttaggctatgcgc 17684583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 23344538 - 23344459
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    ||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||||| ||||||| || |||||    
T  23344538 ttgcttttttgacaatgaatattttctattaacacaagtaaatgacgcttttacctccagcggcagttaacaaccgttag 23344459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 35574487 - 35574541
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  35574487 gaatacttcctattgacacaagtaaatgacgcttttacccccagcggcagttaac 35574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 35588014 - 35587934
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaa 310  Q
    |||||||||||||    ||||||| |||||||| ||| |||| |||||||||||||||| ||| ||||||| || ||||||||||    
T  35588014 ttgcttttttgac----aatactttctattgacacaaataaatgacgcttttacctccaacggcagttaacaaccgttagcctaa 35587934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 37780061 - 37780007
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||| ||||||||||| |||||||| |||||||||||||||| ||| |||||||    
T  37780061 gaatatttcctattgacacaagtaaatgacgcttttacctccaacggcagttaac 37780007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 15356435 - 15356376
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccag 285  Q
    |||||||| |||||  ||||||||||||||||| |||||||| || | ||||||||||||    
T  15356435 ttgcttttctgacatagaatacttcctattgacacaagtaaatgatgtttttacctccag 15356376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 23341440 - 23341519
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    ||||||||||||||   |||||||| ||||||  |||||||| || ||||||||||||| ||| ||||||| || |||||    
T  23341440 ttgcttttttgacatataatacttcttattgatacaagtaaatgatgcttttacctccaacggcagttaacaaccgttag 23341519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 33286280 - 33286249
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattga 257  Q
    ||||||||||||||||||||||||||||||||    
T  33286280 ttgcttttttgacaatgaatacttcctattga 33286249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 35585124 - 35585178
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||   ||||||| |||| ||| |||||||||||||||||||    
T  35585124 gaatacttcctattgatataagtaaatgacgttttaacctccagcggtagttaac 35585178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 37505066 - 37504997
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||| | |||||||||||||||||| |||||||| |||    ||| |||||||||||||||||    
T  37505066 ttgcttttttgatattgaatacttcctattgacacaagtaaatgaccaaatta-ctccagcggtagttaac 37504997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 46191774 - 46191824
Alignment:
Q  246 acttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||| |||||||| |||||||||||| ||| ||| |||||||    
T  46191774 acttcctattgacacaagtaaatgacgcttttacccccatcggcagttaac 46191824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 28865931 - 28865878
Alignment:
Q  261 aagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||| |||||||||| | ||||||| ||||||| || ||||||||||||||    
T  28865931 aagtaaatgacgcttttatccccagcggcagttaacaaccgttagcctaagcgc 28865878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 51936653 - 51936612
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  51936653 ttgcttttttgacattgaatacttcctattgacataagtaaa 51936612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 230 - 351
Target Start/End: Original strand, 48093247 - 48093368
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgcaattagctgccgcta 329  Q
    ||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  48093247 ttttttgacaatgaatacttcctattgacacaagtaaatgtcacttttacttccagcggtagttaaccactgttagcctaagcgcaattaaccgccgcta 48093346  T
Q  330 tgtgcgttctgggatggagcgt 351  Q
    ||||||||||||||||||||||    
T  48093347 tgtgcgttctgggatggagcgt 48093368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 10466545 - 10466607
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcgg 288  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  10466545 ttgcttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttacccccagcgg 10466607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 2332762 - 2332832
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||||||||||||||||||||||  || |||| |||| |||||||||||||||| ||||||    
T  2332762 ttgcttttttgacaatgaatacttcctattgacataaataaatgacgtttttacctccagcggttgttaac 2332832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 36774652 - 36774718
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||    
T  36774652 ttttttgacaatgaatacttcctattgacacaggtaaatgatgcttttacctccagcggcagttaac 36774718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 43890450 - 43890362
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||| ||||  ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||| || |||| |||| ||||    
T  43890450 ttgctttttggacatagaatacttcctattgactcaagtaaatgacgcttttacccccagcggcagttaacaaccgttatcctatgcgc 43890362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 49793015 - 49792931
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||| ||| ||||||| ||||||| || ||||| ||| ||||    
T  49793015 ttttttgacgatgaatacttcctattgacacaagtaaatgacgctttcacccccagcggcagttaacaacagttaggctatgcgc 49792931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 2567265 - 2567331
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| |||||| ||||||||| |||||||    
T  2567265 ttttttgacaatgaatacttcctattgacacaaataaatgacacttttatctccagcggcagttaac 2567331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 21168422 - 21168501
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||||||||||| ||| | ||||||||| || |||||    
T  21168422 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttacccccaacagtagttaacaaccgttag 21168501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 36390761 - 36390831
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||| |||||||| |||||||||||||||| |||||||| |||| ||||||| ||| ||| |||||||    
T  36390761 ttgctttcttgacaataaatacttcctattgacacaagtaaatgacgtttttacccccaacggcagttaac 36390831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 2772261 - 2772339
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||| | ||||||||||||||||||||  ||||||| ||| |||||||||||| ||| ||||||| || |||||    
T  2772261 ttgctttttt-ataatgaatacttcctattgacagaagtaaatgacacttttacctccaacggcagttaacaaccgttag 2772339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 26592899 - 26592820
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||||| |||||||| |||||||| || |||||||| ||||||||||||  || |||  |||||| ||||||||    
T  26592899 ttgcttttttgataatgaatatttcctattaacacaagtaaatgacgcttttacccgcaccggccgttaacaactgttag 26592820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 46513756 - 46513822
Alignment:
Q  246 acttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagc 312  Q
    |||||||||| || |||||||| |||||||||||| |||  |||||||||| ||||||| |||||||    
T  46513756 acttcctattaacacaagtaaatgacgcttttacccccaatggtagttaacaactgttatcctaagc 46513822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 9981112 - 9981153
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  9981112 ttgcttttttgacaaggaatacttcctattgacacaagtaaa 9981153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 11284266 - 11284334
Alignment:
Q  246 acttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    |||||||||||||  ||||||| |||| ||||| ||||||||| ||||||| || ||||| ||||||||    
T  11284266 acttcctattgacataagtaaatgacgtttttatctccagcggcagttaacaaccgttagtctaagcgc 11284334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 45936611 - 45936689
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||| ||||||| ||||||| | ||||| || |||||    
T  45936611 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgtttttacc-ccagcggcatttaactaccgttag 45936689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 2775035 - 2774965
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||| |  |||||||| |||||||| |||||||||||||||||| | |||||||    
T  2775035 ttgcttttctgacatagaatattctctattgacacaagtaaatgacgcttttacctccagcagcagttaac 2774965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 9617214 - 9617284
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||  ||||||||||||||||| |||||||| ||     ||||||| |||||||||||||    
T  9617214 ttgcttttttgacatcgaatacttcctattgacacaagtaaatgatcaaattacctctagcggtagttaac 9617284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 20902557 - 20902487
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  |||||||||||||||||  ||||||| |||  |||||||||||| || |||||||    
T  20902557 ttgcttttctgacatagaatacttcctattgacataagtaaatgacatttttacctccagtggcagttaac 20902487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 40729244 - 40729294
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    ||||||||||||||||| ||||||||||| |||||||| |||  |||||||    
T  40729244 ttttttgacaatgaatatttcctattgacacaagtaaatgacatttttacc 40729294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 49790622 - 49790676
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    |||||||| |||||  ||||||||||||||||| |||||||| ||| ||||||||    
T  49790622 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacacttttacc 49790676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 51029652 - 51029582
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||||||||||||||| |||||||| ||| |||||| | ||| ||| |||||||    
T  51029652 ttgcttttctgacatagaatacttcctattgacacaagtaaatgactcttttatccccaacggcagttaac 51029582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 9618470 - 9618401
Alignment:
Q  227 tgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||| |||||||||||||| ||| |||||||| |||    |||| |||| |||||||||||    
T  9618470 tgcttttttgacattgaatacttcctatcgacacaagtaaatgaccaaattacttccaacggtagttaac 9618401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 52073516 - 52073553
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  52073516 ttttttgacaatgaatatttcctattgacacaagtaaa 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 46518389 - 46518349
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaa 266  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  46518389 ttgcttttttgacatggaatacttcctattgacacaagtaa 46518349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 51025994 - 51026034
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaa 266  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  51025994 ttgcttttttgacatagaatacttcctattgacacaagtaa 51026034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 37268145 - 37268057
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  37268145 ttgcatttttgacaatgaatacttcctattgacataagtaaatgacgcttttaccttcagcggtagttaaccaccgttagcctaagcgc 37268057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 37718133 - 37718045
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  37718133 ttgctttttcgacaacgaatacttcctattgacacaagtaaatgacgcttttacctccagcggtagttaaccgccgttagcctaagcgc 37718045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 34470249 - 34470316
Alignment:
Q  229 cttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  34470249 cttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttacccccagcggcagttaac 34470316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 30191670 - 30191746
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgt 302  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||    
T  30191670 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttacccccagcggtagttaacaactgt 30191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 30194559 - 30194485
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||| ||||||||    
T  30194559 ttttttgaccatgaatacttcctattgacacaagtaaatgacgcttttacc-ccagcggcagttaacaactgttag 30194485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 10036831 - 10036900
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| |||||||    
T  10036831 ttgcttttttgacaatgaatacttcctattgacacaagtaaatgactcttttacc-ccagcggcagttaac 10036900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 11377187 - 11377257
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||| |||||||||||||| |||||||| |||||||| ||| |||||||| ||||||| |||||||    
T  11377187 ttgctttttcgacaatgaatactttctattgacacaagtaaatgacacttttacccccagcggcagttaac 11377257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 42321728 - 42321794
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||| |||||||| || | ||||||| ||||||| |||||||    
T  42321728 ttttttgacaatgaatacttcctattgacacaagtaaatgatgtttttacccccagcggcagttaac 42321794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 47760973 - 47760903
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||||||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  47760973 ttgcttttctgacatagaatacttcctattgatacaagtaaatgacgcttttaccttcagcggtagttaac 47760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 51017315 - 51017261
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  51017315 ttgcttttttgacaatgaatacttcctattgacgcaagaatatgacgcttttacc 51017261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 46412475 - 46412544
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaa 295  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||||||||| | ||||||| ||||||    
T  46412475 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttatccccagcggcagttaa 46412544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 44926782 - 44926848
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||| |||||||||||||||||||||||| |||||||| |||| |||| || | ||||| |||||||    
T  44926782 ttttatgacaatgaatacttcctattgacacaagtaaatgacgtttttgcccctagcggcagttaac 44926848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 49272741 - 49272795
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||| |||||||| |||||||||| | ||||||| |||||||    
T  49272741 gaatacttcctattgacacaagtaaatgacgcttttatccccagcggcagttaac 49272795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 14633451 - 14633405
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcgg 288  Q
    ||||||||||||||||| |||||||| ||| |||||||| |||||||    
T  14633451 gaatacttcctattgacacaagtaaatgacacttttacccccagcgg 14633405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 40465618 - 40465668
Alignment:
Q  246 acttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||| |||||||| ||| |||||||| ||||||| |||||||    
T  40465618 acttcctattgacacaagtaaatgacacttttacccccagcggcagttaac 40465668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 46415269 - 46415203
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||| |||||||||||||||||||||| |||||||| ||   |||||||  |||||| |||||||    
T  46415269 tttttttacaatgaatacttcctattgacacaagtaaatgatatttttaccctcagcggcagttaac 46415203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 48098200 - 48098130
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||    ||||||||||| |||||||||    
T  48098200 ttgcttttctgacatagaatacttcctattgacacaagtaaatgaccaaattacctccagcagtagttaac 48098130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 11379820 - 11379767
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttac 279  Q
    |||||||| |||||  |||||||| |||||||| |||||||| |||||||||||    
T  11379820 ttgcttttctgacatagaatactttctattgacacaagtaaatgacgcttttac 11379767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 21196644 - 21196603
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||||    
T  21196644 ttgcttttttgacatagaatacttcctattgacacaagtaaa 21196603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 45266577 - 45266536
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||| ||||||||||| ||||||||    
T  45266577 ttgcttttttgacattgaatatttcctattgacacaagtaaa 45266536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 52560287 - 52560328
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||||||||  |||||||||||| ||||||||    
T  52560287 ttgcttttttgacaatgaaaccttcctattgacacaagtaaa 52560328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 54921407 - 54921448
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| ||||||||| |||||||| ||||||||    
T  54921407 ttgcttttttgacagtgaatactttctattgacacaagtaaa 54921448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 40469293 - 40469261
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgac 258  Q
    |||||||||||||| ||||||||||||||||||    
T  40469293 ttgcttttttgacattgaatacttcctattgac 40469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 47759157 - 47759233
Alignment:
Q  229 cttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||||||||||| ||| |||||||  ||||||| |||| ||||||  ||| ||| ||||||| || |||||    
T  47759157 cttttttgacaatgaatatttcttattgacataagtaaatgacgattttactcccaacggcagttaacaaccgttag 47759233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 33074903 - 33074783
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagc-gcaattagctgc 324  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||| ||| ||||| |||||||| ||| ||   ||| ||| ||| ||||    
T  33074903 ttgcttttttgacaatgaatatttcatattgacacaagtaaatgacgcttttacccccaacggtacttaaccaccgttggctccagcggcagttaactgc 33074804  T
Q  325 cgctatgtgcgttctgggatg 345  Q
    |||||||||||||||||||||    
T  33074803 cgctatgtgcgttctgggatg 33074783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 42167159 - 42167225
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  42167159 ttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttacctccagcggcagttaac 42167225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 8036255 - 8036325
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||||||||||| ||| ||| |||||||    
T  8036255 ttgcttttctgacatagaatacttcctattgacacaagtaaatgacgcttttacccccaacggcagttaac 8036325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 19243230 - 19243142
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| || | ||||||| ||||||  ||||||| |  ||||| ||||||||    
T  19243230 ttgcttttttgacaatgaatacttcctatcgacacaaggaaatgatgtttttacccccagcgacagttaacaatcgttagtctaagcgc 19243142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 19316414 - 19316326
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| || | ||||||| ||||||  ||||||| |  ||||| ||||||||    
T  19316414 ttgcttttttgacaatgaatacttcctatcgacacaaggaaatgatgtttttacccccagcgacagttaacaatcgttagtctaagcgc 19316326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 26488569 - 26488515
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    ||||||||||||||||||||||||| |||||||  ||||||| |||| |||||||    
T  26488569 ttgcttttttgacaatgaatacttcatattgacataagtaaatgacgtttttacc 26488515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 41363004 - 41363041
Alignment:
Q  243 aatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  41363004 aatacttcctattgacacaagtaaatgacgcttttacc 41363041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 16583195 - 16583235
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaa 266  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  16583195 ttgcttttttgacatggaatacttcctattgacacaagtaa 16583235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 23719316 - 23719392
Alignment:
Q  229 cttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| || |||||    
T  23719316 cttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttatctccagcggcagttaacaaccgttag 23719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 24106988 - 24107064
Alignment:
Q  229 cttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||| || |||||    
T  24106988 cttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttatctccagcggcagttaacaaccgttag 24107064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 6978853 - 6978765
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||||||| ||||||||||| ||||||||  ||| ||||||| ||||||| ||||||| || ||||| ||| ||||    
T  6978853 ttgcttttttgacaatgaatatttcctattgacacaagtaaataacgtttttacccccagcggcagttaacaaccgttaggctatgcgc 6978765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 17537145 - 17537213
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaa 295  Q
    |||||||||| |||||||||| ||| ||||| | |||||||| ||||||||||||| |||||||||||||    
T  17537145 ttgctttttttacaatgaatatttcttattgtcacaagtaaatgacgcttttacct-cagcggtagttaa 17537213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 5422351 - 5422297
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacc 280  Q
    ||||||||||||||  |||||||| |||||||| |||||||| ||||||||||||    
T  5422351 ttgcttttttgacagcgaatactttctattgacacaagtaaatgacgcttttacc 5422297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 10602270 - 10602229
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  10602270 ttgcttttttgacattgaatacttcctattgacacaagtaaa 10602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 19507803 - 19507844
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  19507803 ttgcttttttgacaatgaatacttcctattgacacaattaaa 19507844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 22712262 - 22712221
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  22712262 ttgcttttttgacaatgaataattcctattgacacaagtaaa 22712221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 44074362 - 44074310
Alignment:
Q  244 atacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||| ||| |||| |||||||||||| ||||||| |||||||    
T  44074362 atacttcctattgacacaaataaatgacgcttttacccccagcggcagttaac 44074310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 4425040 - 4425094
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaacc 297  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||| | ||||||||    
T  4425040 gaatacttcctattgacacaagtaaatgacgcttttacc-ccagctgcagttaacc 4425094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 24108496 - 24108433
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    ||||||||||||||||| |||||||| || | ||||||| |||||| || ||||| ||||||||    
T  24108496 gaatacttcctattgacacaagtaaatgatgtttttacccccagcgataattaacaactgttag 24108433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 13329753 - 13329790
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||||||||||||||| || ||||||||    
T  13329753 ttttttgacaatgaatacttcctattaacacaagtaaa 13329790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 15630505 - 15630464
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||| ||||    
T  15630505 ttgcttttttgacattgaatacttcctattgacacaaataaa 15630464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 47943261 - 47943345
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||| || |||||||| |||||||| |||| ||||||||| ||||| ||||||| |||||||| ||||||||    
T  47943261 ttttttgacaatgaatattttctattgacacaagtaaatgacgtttttacctcgagcggcagttaacaactgttagtctaagcgc 47943345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 47948691 - 47948775
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    ||||||||||||||||| || |||||||| |||||||| |||| ||||||||| ||||| ||||||| |||||||| ||||||||    
T  47948691 ttttttgacaatgaatattttctattgacacaagtaaatgacgtttttacctcgagcggcagttaacaactgttagtctaagcgc 47948775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 17185201 - 17185131
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |  |||||| |||||||    
T  17185201 ttgctttttcgacaatgaatacttcctattgacacaagtaaatgacgcttttatccacagcggcagttaac 17185131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 2204023 - 2204075
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgctttta 278  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  2204023 ttgcttttttgacaatgaatacttcctattgacacaagtaaatgacactttta 2204075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 3615394 - 3615353
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  3615394 ttgcttttttgacaatgaatacttcctattgacacaaataaa 3615353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 22292838 - 22292771
Alignment:
Q  229 cttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||||||| || |||||||| |||||||| || ||||||||   |||||| |||||||    
T  22292838 cttttttgacaatgaatattttctattgacacaagtaaatgatgcttttactctcagcggcagttaac 22292771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 2206345 - 2206275
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||  ||||||||||||||||| |||||||| || | |||||||  |||||| |||||||    
T  2206345 ttgcttttctgacatagaatacttcctattgacacaagtaaatgatgtttttaccctcagcggcagttaac 2206275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 4997222 - 4997152
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||| | || ||||| ||||||| || | ||| |||| |||||||||| ||||||||||||    
T  4997222 ttgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcggtagttaac 4997152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 42013603 - 42013644
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||||||||  |||||||||||| ||||||||    
T  42013603 ttgcttttttgacaatgaaatcttcctattgacacaagtaaa 42013644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 1805149 - 1805109
Alignment:
Q  227 tgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||||  |||||||||||| ||||||||    
T  1805149 tgcttttttgacaatgaaatcttcctattgacacaagtaaa 1805109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 10552701 - 10552741
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaa 266  Q
    ||||||||||||||  ||||||||||||||||| |||||||    
T  10552701 ttgcttttttgacatggaatacttcctattgacacaagtaa 10552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 7483703 - 7483759
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagc 286  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  7483703 ttttttgacaatgaatacttcctattgacacaagtaaatgacgcttttacccccagc 7483759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 1690368 - 1690447
Alignment:
Q  232 ttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaag 311  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||| |  |||||| ||||||| || |||||||||||    
T  1690368 ttttgacaatgaatacttcctattgacacaagtaaatgacgtttttatcctcagcggcagttaacaaccgttagcctaag 1690447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 7486661 - 7486582
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttag 305  Q
    |||||||||| ||||||||||||| |||||||| |||||||| |||||||||||| ||| ||  ||||||| ||||||||    
T  7486661 ttgctttttttacaatgaatactttctattgacacaagtaaatgacgcttttacccccaacgacagttaacaactgttag 7486582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 36351328 - 36351263
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||| |||||||    
T  36351328 ttttttgacaatgaatacttcctattgacacaagtaaatgacggttttacc-ccagcggcagttaac 36351263  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 2897956 - 2898026
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||| |||||| ||||||||||| |||||||| |||    |||||||||||||||||||||    
T  2897956 ttgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagttaac 2898026  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 1696755 - 1696668
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    |||||||| ||||| |||| ||||||||||||| |||||||| ||| ||||||| | |||||  ||||||| || ||||||||||||||    
T  1696755 ttgcttttctgacattgaa-acttcctattgacacaagtaaatgacacttttactttcagcgacagttaacaaccgttagcctaagcgc 1696668  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 5124528 - 5124458
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| ||||| ||| | |||| ||||||| |||||||| |||| ||||||||||||| |||||||||    
T  5124528 ttgcttttctgacattgattccttcttattgacacaagtaaatgacgtttttacctccagcagtagttaac 5124458  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 8214360 - 8214319
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  8214360 ttgcttttttgacattgaatacttcctattgacacaagtaaa 8214319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 12936262 - 12936303
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12936262 ttgcttttttgacattgaatacttcctattgacacaagtaaa 12936303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 12950417 - 12950458
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  12950417 ttgcttttttgacattgaatacttcctattgacacaagtaaa 12950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 22965817 - 22965776
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  22965817 ttgcttttttgacattgaatacttcctattgacacaagtaaa 22965776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 22964672 - 22964741
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||||||| ||||||||||||||||||  ||||||| |||    ||||||||| |||||||||||    
T  22964672 ttgcttttttgacattgaatacttcctattgacataagtaaatgaccaaattacctcca-cggtagttaac 22964741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 39939970 - 39940035
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||||| |||||||||||||||||| |||||||| |||    ||||||||| |||||||||||    
T  39939970 ttttttgacattgaatacttcctattgacacaagtaaatgaccaaattacctcca-cggtagttaac 39940035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 6791649 - 6791689
Alignment:
Q  227 tgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  6791649 tgcttttttgacaatgaatactttatattgacacaagtaaa 6791689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 36348572 - 36348659
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaaccactgttagcctaagcgc 314  Q
    |||||||| |||||  ||| ||| ||||||| | |||||||| |||||||||||| ||||||| | ||||| || |||| |||||||||    
T  36348572 ttgcttttctgacatagaaaactacctattgtcacaagtaaatgacgcttttacc-ccagcggcaattaacaaccgttatcctaagcgc 36348659  T

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Target: scaffold0589 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 5613 - 5547
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||| |||||||||||||| ||||||| |||||||| | |||||||||| ||||||| |||||||    
T  5613 tttttttacaatgaatacttcttattgacacaagtaaatggcgcttttacccccagcggcagttaac 5547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 1392 - 1461
Alignment:
Q  227 tgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||| |||||  |||||||||||||| ||  || |||| |||||||||||||||||||| |||||||    
T  1392 tgcttttctgacatagaatacttcctatttacataaataaatgacgcttttacctccagcggcagttaac 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 12398800 - 12398746
Alignment:
Q  242 gaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    ||||||||||||||||| |||||||| |||||||||| | ||||||| |||||||    
T  12398800 gaatacttcctattgacacaagtaaatgacgcttttatccccagcggcagttaac 12398746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 9904695 - 9904654
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    |||||||||||||| ||||||||| |||||||| ||||||||    
T  9904695 ttgcttttttgacattgaatactttctattgacacaagtaaa 9904654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 127209 - 127279
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaacgacgcttttacctccagcggtagttaac 296  Q
    |||||||| |||||| ||||||||||||| ||| |||||||| |||    ||||| |||||||||||||||    
T  127209 ttgcttttctgacaaagaatacttcctatcgacacaagtaaatgaccaaattacccccagcggtagttaac 127279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 130607 - 130566
Alignment:
Q  226 ttgcttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||  ||||||||||||||||| ||||||||    
T  130607 ttgcttttttgacatagaatacttcctattgacacaagtaaa 130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 285 - 322
Alignment:
Q  230 ttttttgacaatgaatacttcctattgacgcaagtaaa 267  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  285 ttttttgacaatgaatacttcttattgacacaagtaaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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