View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_high_5 (Length: 429)
Name: NF3081_high_5
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 129 - 412
Target Start/End: Original strand, 2510306 - 2510606
Alignment:
| Q |
129 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaa-----------------caattgtccaaaaaatgt |
211 |
Q |
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| T |
2510306 |
tataaaaaacccatattaattaaaatcattcaatattgttgacaattgaaaaagaaatttgacaaaatcttgaactctacaacaattgtccaaaaaatgt |
2510405 |
T |
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| Q |
212 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggatggttgtcgtcaactatatgacatggaaaacaatggtgtaaaatacaagatg |
311 |
Q |
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| T |
2510406 |
caacaaatctttccacttcattaaatgtatgtgagagtgtctcttggatggttgtcgtcaactatatgacatggaaaacaatggtgtaaaatacaagatg |
2510505 |
T |
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| Q |
312 |
catatttgtgcaaagaatgaaaataataatattcatgaaggaaggttatggataaatcccagactctattttcaaatttttgcatttgcctatctcttta |
411 |
Q |
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| T |
2510506 |
catatttgtgcaaagaatgaaaataataatattcatgaaggaaggttatggataaatccgagactctattttcaaatttttgcatttgcctatctcttta |
2510605 |
T |
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| Q |
412 |
t |
412 |
Q |
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| T |
2510606 |
t |
2510606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 2509905 - 2510023
Alignment:
| Q |
10 |
aggaggagcacagaatcatttatatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataa |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2509905 |
aggaggagctcagaatcatttatatcaaactttttagaaaagtttgatgtttgtttgtaaactttttcgttgtatccaacgattgcatttaatactataa |
2510004 |
T |
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| Q |
110 |
aattgatctacacgtaaat |
128 |
Q |
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| T |
2510005 |
aattgatctacacgtaaat |
2510023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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