View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_1 (Length: 591)
Name: NF3081_low_1
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Original strand, 56378264 - 56378838
Alignment:
| Q |
19 |
ggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctgcctgccattgtcacagaaacttcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378264 |
ggaatgctacagatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctgcctgccattgtcacagaaacttcca |
56378363 |
T |
|
| Q |
119 |
cagaaaagaaatccaaggtgagactgaggatcaggagaactaccaccatcactcagccttcaatttcaacttcaacagacagcagcaccaccacagcatg |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
56378364 |
cagaaaagaagtccaaggtgagactgaggatcaggagaactaccaccatcactcagccttcaacttcaacttcaacagacagcagcaccaccacagcatg |
56378463 |
T |
|
| Q |
219 |
aggaaattcatgttacctcttcctgatcaggctcttggtcttggctaccacccccaccactctattcctaatacagcatcagcagcagcaacaggt---a |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
56378464 |
aggaaattcatgttacctcttcctgatcaggctcttggtcttggctaccaccaccaccactctactcctaatacagcatcagcagcagcaacaggtaaca |
56378563 |
T |
|
| Q |
316 |
acaacaacattcttccttctagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaatctgatgaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378564 |
acaacaacattcttccttctagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaatctgatgaaca |
56378663 |
T |
|
| Q |
416 |
agaagaggcagcaggtagactacatatg---------catcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcaca |
506 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378664 |
agaagaggcagcaggtagactacatatgcatcatcatcatcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcaca |
56378763 |
T |
|
| Q |
507 |
caggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378764 |
caggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
56378838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 2494418 - 2494351
Alignment:
| Q |
489 |
ttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaa |
556 |
Q |
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||||||||||| || ||||| || |||||||| || ||| |||| ||||||||||||||||| ||||| |
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| T |
2494418 |
ttcaggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaa |
2494351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 545
Target Start/End: Complemental strand, 14021574 - 14021521
Alignment:
| Q |
492 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
545 |
Q |
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|||||||||||||| |||||||||||||| || |||||| | || ||||||||| |
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| T |
14021574 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
14021521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 34371350 - 34371250
Alignment:
| Q |
30 |
gatggctgtggtgagttcatgcccagtggtgaacaaggaaccattgaagcactcaactgctctgcctgccattgtcacagaaacttccacagaaaagaaa |
129 |
Q |
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||||| |||||||| |||||||| ||||| ||| | | || ||||||| ||||| || | ||| ||| |||| || |||||||||||||||||||||| |
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| T |
34371350 |
gatggatgtggtgaattcatgccaagtggagaaaatgacacacttgaagctctcaaatgttgtgcttgcaattgccatagaaacttccacagaaaagaaa |
34371251 |
T |
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| Q |
130 |
t |
130 |
Q |
| |
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| |
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|
| T |
34371250 |
t |
34371250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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