View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_12 (Length: 236)
Name: NF3081_low_12
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31628359 - 31628127
Alignment:
| Q |
1 |
tgaatttgattatgtaaaaagttatttaatgccttgtaatttaaagataattattctgcttaatgtttgtacgagtgatcttggtactttagtttctact |
100 |
Q |
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| T |
31628359 |
tgaacttgattatgtaaaaagttaattaatgccttgtaatttaaagataattattctgcttaatgtttgtacgagtgatcttggtactttagtttctact |
31628260 |
T |
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| Q |
101 |
tgcaggtctctt-------------ctagcttcaatatagcttttatttgtacgcaaactaataggtgtcaccatgttcatatgtattgtgtaattatgt |
187 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31628259 |
tgcaggtctcttctttcttctaatcctagcttcaatatagcttttatttgtaggcaaactaataggtctcaccatgttcatatgtattgtgtaattatgc |
31628160 |
T |
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| Q |
188 |
gtctatttnnnnnnnnttaaaagcagttagaat |
220 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
31628159 |
gtctatttaaaaaaaattaaaagcagttagaat |
31628127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31679024 - 31679072
Alignment:
| Q |
1 |
tgaatttgattatgtaaaaagttatttaatgccttgtaatttaaagataa |
50 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31679024 |
tgaatttgattatgtaaaaagtta-ataatgccttgtaatttaaagataa |
31679072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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