View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_13 (Length: 213)
Name: NF3081_low_13
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 31679087 - 31678913
Alignment:
| Q |
23 |
atgaaacagaacaatttatctttaaattacaaggcattattaactttttacataatcaaattcaaa-------tgtaattgaaagacaactttagagaat |
115 |
Q |
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| T |
31679087 |
atgaaacataacaatttatctttaaattacaaggcattattaactttttacataatcaaattcaaaattcaaatgcaattgaaagacaattttagagaat |
31678988 |
T |
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| Q |
116 |
aaattgaatattttcttaacaatcgacatgtattccttaaatcaccatacacgacttacctaatttaggtcactaaaa |
193 |
Q |
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| T |
31678987 |
aaattgcatattt-cttaacaactgacat--attccttaaatcaccatacaagacttacctaatttaggtcactaaaa |
31678913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 31628310 - 31628465
Alignment:
| Q |
38 |
ttatctttaaattacaaggcatta-ttaactttttacataatcaaattcaaatgtaattgaaagacaactttagagaataaattgaatattttcttaaca |
136 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
31628310 |
ttatctttaaattacaaggcattaattaactttttacataatcaagttcaaatgtaatt-aaagacaactttagagaataaattgcatattttcttaaca |
31628408 |
T |
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| Q |
137 |
atcgacatgtattccttaaatcaccatacacgacttacctaatttaggtcactaaaatc |
195 |
Q |
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|| ||| |||||||| |||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
31628409 |
attaaca--aattccttatatcaccatacacaacttatctaatttaggtgactaaaatc |
31628465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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