View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_2 (Length: 562)
Name: NF3081_low_2
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 85 - 549
Target Start/End: Complemental strand, 33855255 - 33854777
Alignment:
| Q |
85 |
caacggcttttgctgttagaattaacttagttaggtgtataaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgattgaacaaga |
184 |
Q |
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| T |
33855255 |
caacggcttttgctgttagaattaacttagttaggtggttaaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgattgaacaaga |
33855156 |
T |
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| Q |
185 |
----------acatttataatgactattttaatgactctttatttcctagatgattgaagtgggtaaataattcttgaagagcccagaatgtaatagctt |
274 |
Q |
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| T |
33855155 |
gtagacactaacattaataatgactattttaatgactgttaatttcctagatgattgaagtgggtaaataattcttgaagaacccagaatgtaatagctt |
33855056 |
T |
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| Q |
275 |
agtcatactatcataaagcacattgttaaatctattaaaattttgatattatgagctttgatcattatcagtgnnnnnnnnnnnnnnnnnnnnngtgatt |
374 |
Q |
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| T |
33855055 |
agtcatactatcataaagcacattgttaaatctatt-gaattttgatcttatgagctttg---attatcagtgtttaattttttattttattttgtgatt |
33854960 |
T |
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| Q |
375 |
taggaaaagaagaaatctcgttcaagatcaaataggtaagtttttaattgtgagagttattctttgacattattgagatatcagcaaatacacgt----- |
469 |
Q |
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| T |
33854959 |
taggaaaagaagaaatctcgttcaagatcaaataggtaagtttttaattgt--gagttattctttgacattattgagatatcagcaaatacacgttgttt |
33854862 |
T |
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| Q |
470 |
------tgtttaatgactgtttttatgcgtaacagtgatgaagaggaagttattctagctagatgtcactatacagaggcacaggt |
549 |
Q |
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| T |
33854861 |
tgttcgtgtttaat-actgtttttatgcgtaacagtgatgaagaggaagttattctagctagatgtcactatacagaggcacaggt |
33854777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33855703 - 33855635
Alignment:
| Q |
19 |
agaaagataaatgtaatcacatgtgcgtatttattagaacatgatgaattaaatttgtgtttatgtcaa |
87 |
Q |
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| T |
33855703 |
agaaagataaatgtaatcacatgtgcgtatttattagaacatgatgaattaaatttgtgttcatgtcaa |
33855635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 28214211 - 28214257
Alignment:
| Q |
497 |
agtgatgaagaggaagttattctagctagatgtcactatacagaggc |
543 |
Q |
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| T |
28214211 |
agtgatgaagatgaagttcttcaagctagatgtcactatacagaggc |
28214257 |
T |
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