View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_6 (Length: 394)
Name: NF3081_low_6
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 50559174 - 50558949
Alignment:
| Q |
23 |
aattcaatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgatgtttatgctcgt |
122 |
Q |
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| T |
50559174 |
aattcaatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgt |
50559075 |
T |
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| Q |
123 |
ttctgtcgtctttggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattattactagagctttggaacagaattgttctccta |
222 |
Q |
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| T |
50559074 |
tactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattgttactagagctttggaacagaattgttctccta |
50558975 |
T |
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| Q |
223 |
aacaaattgctgacaagtactatcaa |
248 |
Q |
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| T |
50558974 |
aacaaattgctgacaagtactatcaa |
50558949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 279 - 377
Target Start/End: Complemental strand, 50558918 - 50558820
Alignment:
| Q |
279 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtgtttttgtgtagataccatgctattcataag |
377 |
Q |
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| T |
50558918 |
gattcaatggttttacactcatcttgcttactcctaaagcagaatttcaataatcgtcttttctcggtttttttgtgtagataccatgctattcataag |
50558820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 241
Target Start/End: Complemental strand, 29774798 - 29774648
Alignment:
| Q |
91 |
caggtgtattgagtgccgatgtttatgctcgtttctgtcgtctttggggttacaatgttctctacatttgtggtactgatgagtatggtactccaattat |
190 |
Q |
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| T |
29774798 |
caggtgtgttgagtgctgatgtgtttgctcgatactgtcgtcttaggggttacaatgcgatttacatctgtggtaccgatgagtatgggactgcaacgga |
29774699 |
T |
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| Q |
191 |
tactagagctttggaacagaattgttctcctaaacaaattgctgacaagta |
241 |
Q |
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| T |
29774698 |
gactaaagcattggaagagaattgttctcccaaagagatttgtgacaagta |
29774648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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