View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3081_low_8 (Length: 343)

Name: NF3081_low_8
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3081_low_8
NF3081_low_8
[»] chr5 (3 HSPs)
chr5 (16-111)||(11386905-11387000)
chr5 (195-242)||(11387219-11387266)
chr5 (96-145)||(11386999-11387048)
[»] chr4 (3 HSPs)
chr4 (16-111)||(26382474-26382569)
chr4 (96-151)||(26382568-26382623)
chr4 (195-242)||(26382790-26382837)
[»] chr3 (2 HSPs)
chr3 (211-250)||(50515592-50515631)
chr3 (29-63)||(50515851-50515885)
[»] chr8 (1 HSPs)
chr8 (226-308)||(21566046-21566127)
[»] chr7 (1 HSPs)
chr7 (226-308)||(39073152-39073233)
[»] chr2 (2 HSPs)
chr2 (226-308)||(22989861-22989942)
chr2 (226-308)||(37903927-37904008)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 11386905 - 11387000
Alignment:
Q  16 attttttggtagaatcattcatctatttactacacatttatttgtatataatattgatattgatacatattcagatagttcttctattatgtaact 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11386905 attttttggtagaatcattcatctatttactacacatttatttgtatataatattgatgttgatacatattcagatagttcttctattatgtaact 11387000  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 11387219 - 11387266
Alignment:
Q  195 ttcttctattttctacatgatctatatatttattgacttctttatcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11387219 ttcttctattttctacatgatctatatatttattgacttctttatcat 11387266  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 11386999 - 11387048
Alignment:
Q  96 cttctattatgtaactgtcaattgttccaccgtccatcttcttctatttt 145  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  11386999 cttctattatgtaactgtcaattgttccactgtccatcttcttttatttt 11387048  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 26382474 - 26382569
Alignment:
Q  16 attttttggtagaatcattcatctatttactacacatttatttgtatataatattgatattgatacatattcagatagttcttctattatgtaact 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26382474 attttttggtagaatcattcatctatttactacacatttatttgtatataatattgatgttgatacatattcagatagttcttctattatgtaact 26382569  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 26382568 - 26382623
Alignment:
Q  96 cttctattatgtaactgtcaattgttccaccgtccatcttcttctattttcttcag 151  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26382568 cttctattatgtaactgtcaattgttccaccgtccatcttcttttattttattcag 26382623  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 26382790 - 26382837
Alignment:
Q  195 ttcttctattttctacatgatctatatatttattgacttctttatcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26382790 ttcttctattttctacatgatctatatatttattgacttctttatcat 26382837  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 50515631 - 50515592
Alignment:
Q  211 atgatctatatatttattgacttctttatcatgtaacttc 250  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  50515631 atgatctatatatttattgaattctttatcatataacttc 50515592  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 50515885 - 50515851
Alignment:
Q  29 atcattcatctatttactacacatttatttgtata 63  Q
    |||||| ||||||||||||||||||||||||||||    
T  50515885 atcatttatctatttactacacatttatttgtata 50515851  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 21566127 - 21566046
Alignment:
Q  226 attgacttctttatcatgtaacttcttattgattt-tgtaactccttacactactcattgtttttgatttataacctacaaatt 308  Q
    |||| ||||||||| ||||||||||  ||| |||| ||| | ||||| ||||||||||| ||||  ||||||||||||||||||    
T  21566127 attgccttctttattatgtaacttccaattaatttgtgtgattccttccactactcattttttt--atttataacctacaaatt 21566046  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 39073233 - 39073152
Alignment:
Q  226 attgacttctttatcatgtaacttcttattgattt-tgtaactccttacactactcattgtttttgatttataacctacaaatt 308  Q
    |||| ||||||||| ||||||||||  ||| |||| ||| | ||||| ||||||||||| ||||  ||||||||||||||||||    
T  39073233 attgccttctttattatgtaacttccaattaatttgtgtgattccttccactactcattttttt--atttataacctacaaatt 39073152  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 22989942 - 22989861
Alignment:
Q  226 attgacttctttatcatgtaacttcttattgattt-tgtaactccttacactactcattgtttttgatttataacctacaaatt 308  Q
    |||| ||||||||| ||||||||||  ||| |||| ||| | ||||| ||||||||||| ||||  ||||||||||||||||||    
T  22989942 attgccttctttattatgtaacttccaattaatttgtgtgattccttccactactcattttttt--atttataacctacaaatt 22989861  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 37904008 - 37903927
Alignment:
Q  226 attgacttctttatcatgtaacttcttattgattt-tgtaactccttacactactcattgtttttgatttataacctacaaatt 308  Q
    |||| ||||||||| ||||||||||  ||| |||| ||| | ||||| ||||||||||| ||||  ||||||||||||||||||    
T  37904008 attgccttctttattatgtaacttccaattaatttgtgtgattccttccactactcattttttt--atttataacctacaaatt 37903927  T

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