View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3081_low_9 (Length: 304)
Name: NF3081_low_9
Description: NF3081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3081_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 40681350 - 40681120
Alignment:
| Q |
11 |
cacagacagtagctgaaatcaaacacataagttgaagaaaa--gcatcaatatacatgcataaataccttgattattcgaaacaagttgttgcaatgttc |
108 |
Q |
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| T |
40681350 |
cacagacagtagctgaaatcaaacacataagttgaagaaaattgcatcaatatacatgcataaataccttgattattcgaaagaagttgttgcaatgttc |
40681251 |
T |
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| Q |
109 |
caacacaagcttatgtacagattcagctgtaaattctgtcaatgatggacatggaagcttggagagtaatactgatagaggtagagtgtagtgagtgagt |
208 |
Q |
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| T |
40681250 |
caacacaagcttatgtacagattcagctgtaaattctgtcaatgatggacatgtaagcttggagagtgatactgatagaggtagagtgtagtgagtgagt |
40681151 |
T |
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| Q |
209 |
agtgacatgtgagtgtgtacaaatatacatatg |
241 |
Q |
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| T |
40681150 |
agtgacatgtga--gtgtacaaatatacatatg |
40681120 |
T |
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