View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_high_5 (Length: 234)
Name: NF3082_high_5
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31280004 - 31280224
Alignment:
| Q |
1 |
tatgacctatcttagggaagaagattgacagaacatcggtaagttatagtttgcagggtagttctgcatctaaatccttcaaagccttcaatgcccttgg |
100 |
Q |
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| T |
31280004 |
tatgacctatcttagggaagaagattgacagaacattggtaagttatagtttgcagggtagttctgcatctaaatccttcaaagccttcaatgcccttgg |
31280103 |
T |
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| Q |
101 |
aactattgccttttcatttggggatgctatgctaccagaaatacaggtatctaaatattcttttgatacaacaatctcccaattgtatgtgcatagtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31280104 |
aactattgccttttcatttggggatgctatgctaccagaaatacaggtatctaaatattcttttgatacaacaatctcccaattgtatgtgcatagtagt |
31280203 |
T |
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| Q |
201 |
atatttctaaattgtggttca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31280204 |
atatttctaaattgtggttca |
31280224 |
T |
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