View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_high_6 (Length: 227)
Name: NF3082_high_6
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 49673297 - 49673106
Alignment:
| Q |
36 |
caagaaaatcccccactttataggtagagattgtaatgtgattcactaatgaaagtgtgttgtagttcactctttaacttccacaatatatccccgtatt |
135 |
Q |
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| T |
49673297 |
caagaaaatcccccactttataggtagagattgtaatgtgattcactaatgaaagtgtgttgtacttcactctttaacttccacaatatatccccgtatt |
49673198 |
T |
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| Q |
136 |
gaaccacctaatacgcaagttgacttgaaataagaaagactagtggaatttgttagagaaaaggttatcttgcaagaagggcaagtcctcgc |
227 |
Q |
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| T |
49673197 |
gaaccacctaatacgcaagttgacttgaaataagaaagactagtggaatttgttagagaaaaggttatcttgcaagaagggcaagtcctcgc |
49673106 |
T |
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