View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_low_1 (Length: 372)
Name: NF3082_low_1
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 14174215 - 14174387
Alignment:
| Q |
10 |
aagaaaatatagaccaaaactaagcaacggttatttgaactgataattggaagacccaacatgtttctgccgtaggactcaga--aagaatgtcaccaaa |
107 |
Q |
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| T |
14174215 |
aagaaaatatagaccaaaactaagcaacggttatttgaactgataattggaagacccaacatgtttctgccgtaggactcagagaaagaatgtcaccaaa |
14174314 |
T |
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| Q |
108 |
aacttcgtaatgcaaagcctaaaagaagtcatttgatcaacataattatgctcactttaaatattattgctga |
180 |
Q |
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| T |
14174315 |
aacttcgtaatgcaaagcctaaaagaagtcatttgatcaacataattatgctcactttaaatattattgctga |
14174387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 14175189 - 14175246
Alignment:
| Q |
298 |
caagaaactattctatcattgccaaaggattgtaacaccaataaagagttggttatac |
355 |
Q |
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| T |
14175189 |
caagaaactatcctatgattgccaaaggattgtaacaccaataaagagttggttatac |
14175246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 14175250 - 14175306
Alignment:
| Q |
170 |
attattgctgatattaattaattaactttt-ttgtttgtaaacattgaaatatggtt |
225 |
Q |
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| T |
14175250 |
attatagctgatattaattaattaactttttttgtttgtaaacattgaaatatggtt |
14175306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 14195445 - 14195408
Alignment:
| Q |
237 |
attttgttggtttgacctttttgactaaacttttgtag |
274 |
Q |
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| T |
14195445 |
attttgttggtttgacctttttgactaaacttttgtag |
14195408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 54628735 - 54628652
Alignment:
| Q |
90 |
agaaagaatgtcaccaaaaacttcgtaatgcaaagcctaaaagaagtcatttgatcaacataattatgctcactttaaatatta |
173 |
Q |
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| T |
54628735 |
agaaagaatgccaccaaaaacttcgtaatgcaaagcctaaaagaagtcatttgatcaacacaactatgctcacgtaaaatatta |
54628652 |
T |
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