View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_low_2 (Length: 349)
Name: NF3082_low_2
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 9561029 - 9561370
Alignment:
| Q |
1 |
ttgtgaagcatagcgtggtcacagatttagcttcgttcaagcaagcggtttcctttagagggtaaagcagataatctcaaccgttgtcgagaaaattaat |
100 |
Q |
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| T |
9561029 |
ttgtgaagcatagcatggtcacagatttagcttcgttcaagcgagcagtttcctttagagggtaaagcagataatctcaaccgttgtcgagaaaattaat |
9561128 |
T |
|
| Q |
101 |
tgttgggattacttgctttattactctttaaagggaattgctcgctttagagaagtcaaatctattcatcataatcctggtaaatttcataccaattact |
200 |
Q |
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| T |
9561129 |
tgttgggattacttgctttattactctttaaagggaattgcacgctttaaagaagtcaaatctattcatcataatcctggtaaatttcataccaattact |
9561228 |
T |
|
| Q |
201 |
gcttttcttattctatttcaccagcttggtttggttgatgcagaagtgtgttgtaaaatttgaatcattatattttgatgtgaaaaaatgtccaattaca |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9561229 |
gcttttcttattctatttcatcagcttggtttggttgatgcagaagtgtgttgtaaaacttgaatcattatattttgatgtgaaaaaatgtccaattaca |
9561328 |
T |
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| Q |
301 |
aagcgaacctcaattcagtttgattttttctttctctctgct |
342 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9561329 |
aagcgaacctcaattcagtttgattttttctttctcgctgct |
9561370 |
T |
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