View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_low_3 (Length: 322)
Name: NF3082_low_3
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 34980445 - 34980721
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980445 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
34980544 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34980545 |
gatggttgaagttggagatcttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccg |
34980644 |
T |
|
| Q |
216 |
attgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
292 |
Q |
| |
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| T |
34980645 |
attgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 34992847 - 34993115
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
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| T |
34992847 |
tatggcatcaacataaggaacataggtacgaaattctcgataatattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaa |
34992946 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
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| T |
34992947 |
gatggttgaagttggagatcttcaaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcag |
34993046 |
T |
|
| Q |
216 |
attgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggat |
284 |
Q |
| |
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||||||| ||| ||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34993047 |
attgaaggttcacgggatatggcattgattaagataagtccaactaaactagttgaagtacttatggat |
34993115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 34984892 - 34985164
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||| | ||||||||| | ||| | | |||||||| |
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| T |
34984892 |
tatggcatcaacatagggaacataggtacgaaattctcgatgattttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaa |
34984991 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
| |
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| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||| |||||||| | | |
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| T |
34984992 |
gttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcag |
34985091 |
T |
|
| Q |
216 |
attgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
288 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34985092 |
attgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 27542756 - 27542482
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgat--tatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| | ||| |||||||||| | ||||| | ||| | |
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| T |
27542756 |
tatggcatcaacataaggaacataggtacgaaattctcgatgatatattgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaat |
27542657 |
T |
|
| Q |
114 |
aagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttc |
213 |
Q |
| |
|
| | |||||||||||||||| || ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | |
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| T |
27542656 |
aggttggttgaagttggagaattttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgc |
27542557 |
T |
|
| Q |
214 |
cgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
288 |
Q |
| |
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||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
27542556 |
agattgaagcttttcggaacatggcattgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 27582959 - 27583233
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||| ||| |||||||||| | | ||| | ||||||| |
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|
| T |
27582959 |
tatggcatcaacataaggaacataagtacgaaattctcgataatatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttag |
27583058 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
| |
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| |||||| ||||||||| ||| ||||| ||||||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| | |
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| T |
27583059 |
gttggttggagttggagagcttcaaactttacctagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttg |
27583158 |
T |
|
| Q |
216 |
attgaagcttctcgggacatggaa--ttgattaagataagaccaactaaactagttgaattacttatggatgtgg |
288 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| ||| | |||||||||||| |||||||||||||||||||| |
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|
| T |
27583159 |
attgaagcttctcgagacatggcatgttgattaatatatgttcaactaaactagatgaattacttatggatgtgg |
27583233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 27581645 - 27581375
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||| ||| |||||||||| | ||||| | ||| ||| |
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|
| T |
27581645 |
tatggcatcaacataaggacaataggtacaaaattctccatgatattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattattag |
27581546 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
| |
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| |||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||||||||||||| |||| |||||||| ||| |||||||| | |
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| T |
27581545 |
gttggttgaagttggagagcttcaaactttacctagttttgatt--tgtgaaaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatag |
27581448 |
T |
|
| Q |
216 |
attgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
288 |
Q |
| |
|
|||||||| || ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27581447 |
attgaagcctcgtgggacatggcattggttaagataattccaactaaactagttgaattacttatggatgtgg |
27581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 27543635 - 27543854
Alignment:
| Q |
16 |
tatggcatcaacataaggaacataggtacgaaattcttgattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaa |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| | ||||| | ||||||| |
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|
| T |
27543635 |
tatgacatcaacataaggaacataggtacgaaattctcgatgatattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttag |
27543734 |
T |
|
| Q |
116 |
gatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccg |
215 |
Q |
| |
|
| || ||| ||||||||| ||| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||| | | |
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|
| T |
27543735 |
gttgcttggagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcag |
27543834 |
T |
|
| Q |
216 |
attgaagcttctcgggacat |
235 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
27543835 |
attgaagcttctcaggacat |
27543854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
255 |
ccaactaaactagttgaattacttatggatgtgg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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