View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_low_5 (Length: 289)
Name: NF3082_low_5
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 1846907 - 1846650
Alignment:
| Q |
17 |
cactgtcacccagtcgacaacggttgataccagttgctcccaccactcatcaagctgcagaggaagttgcaatgtaagaataaaaatggaaattttaata |
116 |
Q |
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| T |
1846907 |
cactgtcacccagtcgacaacggttgataccagttgctcccactactcatcaagctgtagaggaagttgcaatgtaagaataaaaacggaaattttaata |
1846808 |
T |
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| Q |
117 |
gttatcaacgaacacataagaatgcaccaagagattgcatatcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgc |
216 |
Q |
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| T |
1846807 |
gttatcaacgaacacataagaatgcaccaagagattgcatatcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgc |
1846708 |
T |
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| Q |
217 |
ttagcagaagttgcatcaactcgttcctgaattttcagcactgttttaaggtatatca |
274 |
Q |
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| T |
1846707 |
ttagcagaagttgcatcaactcgttcctgaattttcagcactgttttaaggtatatca |
1846650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 18200027 - 18200277
Alignment:
| Q |
17 |
cactgtcacccagtcgacaacggttgataccagttgctcccaccactcatcaagctgcagaggaagttgcaatgtaagaataaaaatggaaattttaata |
116 |
Q |
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| T |
18200027 |
cactgtcacctagtcgacaaccgttgatgcccattgctcccaccacttatcaagctgccgaagaagttgcaatgtgagaatagacatggaaatttcaata |
18200126 |
T |
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| Q |
117 |
gttatcaacgaacacataagaatgcaccaagagattgcatatcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgc |
216 |
Q |
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| T |
18200127 |
gttatcaaggaacacataagaatgcaccaagagattgcatatcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgc |
18200226 |
T |
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| Q |
217 |
ttagcagaagttgcatcaactcgttcctg-aattttcagcactgttttaag |
266 |
Q |
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| T |
18200227 |
ttatcagaagttgcatcaactggttcctgaaattttcagcactgttttaag |
18200277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 5342724 - 5342468
Alignment:
| Q |
17 |
cactgtcacccagtcgacaacggttgataccagttgctcccaccactcatcaagctgcagaggaagttgcaatgtaagaataaaaatggaaattttaata |
116 |
Q |
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||||||| ||||||||||||| || ||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |
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| T |
5342724 |
cactgtcgcccagtcgacaaccgtcgatgccggttgctcccaccactcatcaagctgcagaagaagttgcaacgtaagaatagaaatggaaattttaa-- |
5342627 |
T |
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| Q |
117 |
gttatcaacgaacacataagaatgcaccaagagattgcatatcaaattgaacaattgtgatgaagttttttatatagcaatatatgtaaataaaacatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | || |||||||||||||||||||||| ||| |
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| T |
5342626 |
gttatcaacgaacacataagaatgcaccaagagattgcatatgaaatttaacaattgtgatgaagtttataatgtagcaatatatgtaaataaaacgtgc |
5342527 |
T |
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| Q |
217 |
ttagcagaagttgcatcaactcgttcctg-aattttcagcactgttttaaggtatatca |
274 |
Q |
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||||||||||||||||||| || || ||| |||||||||||||| ||||||| |||||| |
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| T |
5342526 |
ttagcagaagttgcatcaagtcatttctgaaattttcagcactgctttaagggatatca |
5342468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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