View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3082_low_6 (Length: 245)
Name: NF3082_low_6
Description: NF3082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3082_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 45129993 - 45130220
Alignment:
| Q |
18 |
gttcatttttaataagaaattcaccatttggtctaaagggtccattttctgagaatgcacctactccaagagaagaacaaccaggtcctccattgagcca |
117 |
Q |
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| T |
45129993 |
gttcatttttaataagaaaatcaccatttggtctaaagggtccattttctgagaatgcacctactccaagagaagaacaaccaggtccaccattgagcca |
45130092 |
T |
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| Q |
118 |
aagaacaagaggttttgaagaaggatcagtttctgattcagcaaagtagtaaaaaagtgacttgtgttttttgttatcaactgtgacatatcctgagaat |
217 |
Q |
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| T |
45130093 |
aagaacaagaggttttgaagaaggatcagtttctgattcagcaaagtagtaaaaaagtgacttgtgttttttgttatcaactgtgacatatcctgagaat |
45130192 |
T |
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| Q |
218 |
tgttgaaaggctatgttttgtggttgtc |
245 |
Q |
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| T |
45130193 |
tgttgaaaggctatgttttgtggttgtc |
45130220 |
T |
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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 40282219 - 40282348
Alignment:
| Q |
104 |
cctccattgagccaaagaacaagaggttttgaagaaggatcagtttctgattcagcaaagtagtaaaaaagtgacttgtgttttttgttatcaactgtga |
203 |
Q |
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| T |
40282219 |
cctccattgagccaaaggactaaaggctttgaagatggaccagtttctgattcaacaaaatagtaaaagagatatctgcgttttttttcatcaactgtaa |
40282318 |
T |
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| Q |
204 |
catatcctgagaattgttgaaaggctatgt |
233 |
Q |
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| T |
40282319 |
catatcctgagaagtgttgaaagcctatgt |
40282348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 40282003 - 40282089
Alignment:
| Q |
20 |
tcatttttaataagaaattcaccatttggtctaaagggtccattttctgagaatgcacctactccaagagaagaacaaccaggtcct |
106 |
Q |
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| T |
40282003 |
tcatttttaatcagaacttctccattgggtctgaaaggtccattctcagagaatgcacctactccaagagaagaacaacctggtcct |
40282089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 6634219 - 6634275
Alignment:
| Q |
50 |
ctaaagggtccattttctgagaatgcacctactccaagagaagaacaaccaggtcct |
106 |
Q |
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| T |
6634219 |
ctaaatggcccattttctgaaaatgcaccaacaccaagagaagaacaaccaggtcct |
6634275 |
T |
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