View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_high_39 (Length: 257)
Name: NF3083_high_39
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 8695722 - 8695495
Alignment:
| Q |
18 |
attaactccattactatctatgttaaaagtaatatttatgctacatatattttgttgttgagtatttcgttggttggtaatggttaaataatttgaagat |
117 |
Q |
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| T |
8695722 |
attaactccattactatctatgttaacagtaatatttatgctacctatattttgttgttgagtatttcgttggttggtaatggttaaataatttgaagac |
8695623 |
T |
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| Q |
118 |
cgtgtgtttggtagcggggttttaggtggttatgagtggtaatccagtaaggccacattaatagaggatctaggtgaggtgacacattctaaaaagagca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8695622 |
cgtgtgtttggtagcggggttttaggtggttatgagtggtaatctagtaaggccacattaatagaggatctaggtgaggtgacacattctaaaaagagca |
8695523 |
T |
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| Q |
218 |
tggttgtatatcacaaaagttgcatatt |
245 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
8695522 |
tggttgtatatcataaaagttgcatatt |
8695495 |
T |
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