View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_high_47 (Length: 247)
Name: NF3083_high_47
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 50101351 - 50101113
Alignment:
| Q |
1 |
cgcttccaacagcttcttcttcttcaatggtttgcattgttatcgttcctctttcgcaaccgtaactgaatagtttcacggtgaacgaaggaacgaacga |
100 |
Q |
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| T |
50101351 |
cgcttccaacagcttcttcttcttcaatggtttgcattgttatcgttcctctttcgcaaccgtaactgaatagtttcacggtgaacgaaggaacgaacga |
50101252 |
T |
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| Q |
101 |
gtnnnnnnnnnnnnnnnnnggattgataagaagcgctttcccgcgcaacaagtgattattattactttgaaaaagttgttgagagaaaaagaaagagttt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50101251 |
gtgagagagagagaga----gattgataagaagcgctttcccgcgcaacaagtgattattattactttgaaaaagttgttgagagaaaaagagagagttt |
50101156 |
T |
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| Q |
201 |
tgagaattgttttgcactgatatgttgttgtgttctgttctgt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101155 |
tgagaattgttttgcactgatatgttgttgtgttctgttctgt |
50101113 |
T |
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