View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3083_high_62 (Length: 212)
Name: NF3083_high_62
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_high_62 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 9688228 - 9688020
Alignment:
| Q |
4 |
tcacttttgtctacattctctatcattttcttttgagcctcagatcagatctctgatctacaaccatggctgaaaaggtaaagtttatttcaatttccat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9688228 |
tcacttttgtctacattctctatcattttcttttgagcctcagatcagatctctgatctacaaccatggctgaaaaggtaaagtttatttcaatttccat |
9688129 |
T |
|
| Q |
104 |
caaaattatcaatctttcttatctccaaaacaaacacataattgtcacaaaaatgaaattgtgatcttcatttcattttaattggtgtttttatacttga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9688128 |
caaaattatcaatctttcttatctccaaaacaaacacataattgtcacaaaaatgaaattgtgatcttcatttcattttaattggtgtttttatacttga |
9688029 |
T |
|
| Q |
204 |
atttgtatc |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
9688028 |
atttgtatc |
9688020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University